| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4186980 = | 59 (0.670) | 4 (0.050) | 3/234 | NT | 6.9% | coding (283/1242 nt) | PP_3683 | hypothetical protein |
| ? | NC_002947 | 4187004 = | 52 (0.620) | coding (307/1242 nt) | PP_3683 | hypothetical protein | |||||
CTCGTCCACACTAGCAAAATTGACCGTCCAGGCATGATTGCCGTCCGACTGGATGGCTTGCGTCCAAGCTGACTCAAGGAGCGGCACCGCGGAGCTAGCAACCTGACTGTCCACGAAAACGAGGATCTGGTGGTCGTGCGCA‑G‑CCACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4187129‑4186980‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccagATCCTCGTTTTCGTGGACAGTCAGGTTGCTAGCTCCGCGGTGCCGCTCCTTGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAG > NC_002947/4187004‑4187148 CTCGTCCACACTAGCAAAATTGACCGTCCAGGCATGATTGCCGTCCGACTGGATGGCTTGCGTCCAAGCTGACTCAAGGAGCGGCACCGCGGAGCTAGCAACCTGACTGTCCACGAAAACGAGGATCTGGTGGTCGTGCGCA‑G‑CCACCAG > 2:1743263/1‑150 GACCGTCCAGGCATGATTGCCGTCCGACTGGATGGCTTGCGTCCAAGCTGACTCAAGGAGCGGCACCGCGGAGCTAGCAACCTGACTGTCCACGAAAACGAGGATCTGGTGG‑C‑TGCGCACGACCACCAGATCCTCGTTTTCGTGGACA < 1:1166151/148‑1 GACCGTCCAGGCATGATTGCCGTCCGACTGGATGGCTTGCGTCCAAGCTGACTCAAGGAGCGGCACCGCGGAGCTAGCAACCTGACTGTCCACGAAAACGAGGATCTGGTGG‑C‑TGCGCACGACCACCAGATCCTCGTTTTCGTGGACA > 2:1166151/1‑148 ATCTGGTGGTCGTGCGCA‑G‑CCACCAGATCCTCGTTTTCGTGGACAGTCAGGTTGCTAGCTCCGCGGTGCCGCTCCTTa > 1:771386/1‑77 ATCTGGTGGTCGTGCGCA‑G‑CCACCAGATCCTCGTTTTCGTGGACAGTCAGGTTGCTAGCTCCGCGGTGCCGCTCCTTa < 2:771386/78‑2 CCACCAGATCCTCGTTTTCGTGGACAGTCAGGTTGCTAGCTCCGCGGTGCCGCTCCTTGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGT > 1:1747309/1‑111 CCACCAGATCCTCGTTTTCGTGGACAGTCAGGTTGCTAGCTCCGCGGTGCCGCTCCTTGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGT < 2:1747309/111‑1 CACCAGATCCTCGTTTTCGTGGACAGTCAGGTTGCTAGCTCCGCGGTGCCGCTCCTTGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTGAGGTCGTTCA > 1:1357243/1‑150 CACCAGATCCTCGTTTTCGTGGACAGTCAGGTTGCTAGCGCCGCGGTGCCGCTCCTTGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCA < 1:252243/150‑1 ACCAGATCCTCGTTTTCGTGGACAGTCAGGTTGCTAGCTCCGCGGTGCCGCTCCTTGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAG > 1:1401523/1‑150 ACCAGATCCTCGTTTTCGTGGACAGTCAGGTTGCTAGCTCCGCGGTGCCGCTCCTTGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAG > 2:976593/1‑150 CTCGTCCACACTAGCAAAATTGACCGTCCAGGCATGATTGCCGTCCGACTGGATGGCTTGCGTCCAAGCTGACTCAAGGAGCGGCACCGCGGAGCTAGCAACCTGACTGTCCACGAAAACGAGGATCTGGTGGTCGTGCGCA‑G‑CCACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4187129‑4186980‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccagATCCTCGTTTTCGTGGACAGTCAGGTTGCTAGCTCCGCGGTGCCGCTCCTTGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAG > NC_002947/4187004‑4187148 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |