| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4458811 | 59 (0.670) | 4 (0.050) | 4/238 | NT | 7.1% | intergenic (+59/‑209) | pcaJ/trkH‑I | 3‑oxoadipate CoA‑transferase subunit A/potassium transporter |
| ? | NC_002947 | = 4458834 | 48 (0.570) | intergenic (+82/‑186) | pcaJ/trkH‑I | 3‑oxoadipate CoA‑transferase subunit A/potassium transporter | |||||
CTGCGCGGACATCGACTTTGACGAGCTGCAGAAACTCAGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4458692‑4458811‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagcACCGCGTGCTCCCTGCTCGCGGCGCTTGTGCGGCACTATTGATTGTGCCGCAGAGGCATGGAAAGCCCTAAGTCTTCCTGGATCACTTGATCAGCGGCACGCCACTGAGTTTCTGCAGCTCGTCAAAGTCGATGTCCGCGCAGATTTCG < NC_002947/4458834‑4458686 CTGCGCGGACATCGACTTTGACGAGCTGCAGAAACTCAGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCACCGCGTGCTCCCTGCTCGCGGCGCTTGTG < 1:1782070/150‑1 CCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCACCGCGTGCTCCCTGCTCGCGGCGCTTGTGCGGCA > 1:899920/1‑73 CCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCACCGCGTGCTCCCTGCTCGCGGCGCTTGTGCGGCA < 2:899920/73‑1 CCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGTGCGGCACTATTGATTGTGCCGCAGAGGCATGGAAAGCCCTAAGTCTTCCTGGATCACTTGATCAGCGGCACGCCACTGAGTTTCTGCA > 1:422658/1‑150 GCACCGCGTGCTCCCTGCTCGCGGCGCTTGTGCGGCACTATTGATTGTGCCGCAGAGGCATGGAAAGCCCTAAGTCTTCCTGGATCACTTGATATGCGGCACGCCACTGAGTTTCTGCAGCTCGTCAAAGTCGATGTCCGCGCAGATTTC > 1:24261/1‑150 CACCGCGTGCTCCCTGCTCGCGGCGCTTGTGCGGCACTATTGATTGTGCCGCAGAGGCATGGAAAGCCCTAAGTCTTCCTGGATCACTTGATCAGCGGCACGCCACTGAGTTTCTGCAGCTCGTCAAAGTCGATGTCCGCGCAGATTTCG > 1:2337885/1‑150 CTGCGCGGACATCGACTTTGACGAGCTGCAGAAACTCAGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4458692‑4458811‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagcACCGCGTGCTCCCTGCTCGCGGCGCTTGTGCGGCACTATTGATTGTGCCGCAGAGGCATGGAAAGCCCTAAGTCTTCCTGGATCACTTGATCAGCGGCACGCCACTGAGTTTCTGCAGCTCGTCAAAGTCGATGTCCGCGCAGATTTCG < NC_002947/4458834‑4458686 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |