New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4458811	59 (0.670)	4 (0.050)	4/238	NT	7.1%	intergenic (+59/‑209)	pcaJ/trkH‑I	3‑oxoadipate CoA‑transferase subunit A/potassium transporter
	?	NC_002947	= 4458834	48 (0.570)					intergenic (+82/‑186)	pcaJ/trkH‑I	3‑oxoadipate CoA‑transferase subunit A/potassium transporter

CGAAATCTGCGCGGACATCGACTTTGACGAGCTGCAGAAACTCAGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTAAAAAATTGCCGGCCACGACTTTACGCCTTTTTTACTCGACATTACCG  >  NC_002947/4458686‑4458975                                                                                                                                                     |                                                                                                                                              cGAAATCTGCGCGGACATCGACTTTGACGAGCTGCAGAAACTCAGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTg                                                                                                                                              >  1:2337885‑M2/1‑149 (MQ=255)  gAAATCTGCGCGGACATCGACTTTGACGAGCTGCAGAAACTCAGTGGCGTGCCGCATATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTgc                                                                                                                                             >  1:24261‑M2/1‑148 (MQ=255)        tGCGCGGACATCGACTTTGACGAGCTGCAGAAACTCAGTGGCGTGCCGCTGATCAAGTGAGCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCAGACCCTTTAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTgaga                                                                                                                                       <  1:1009712/150‑1 (MQ=255)             ggACATCGACTTTGACGAGCTGCAGAAACTCAGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTAcc                                                                                                                                  <  1:758629/150‑1 (MQ=255)               aCATCGACTTTGACGAGCTGCAGAAACTCAGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTAc                                                                                                                                   >  2:517566/1‑147 (MQ=255)               aCATCGACTTTGACGAGCTGCAGAAACTCAGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTAc                                                                                                                                   <  1:517566/147‑1 (MQ=255)                         tGACGAGCTGCAGAAACTCAGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCt                                                                                                                      >  2:728107/1‑150 (MQ=255)                           aCGAGCTGCAGAAACTCAGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTc                                                                                                                    <  1:362443/150‑1 (MQ=255)                              aGCTGCAGAAACTCAGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGaa                                                                                                                 <  2:2335067/150‑1 (MQ=255)                                 tGCAGAAACTCAGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCACCGCGTGCTCCCTGCTCGCGGCgcttgtgcggcactattgattgtgccgcagagg                                                                                                              >  1:422658‑M2/1‑117 (MQ=255)                                    aGAAACTCAGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGAt                                                                                                           <  1:234141/150‑1 (MQ=255)                                          tCAGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAAct                                                                                                     >  2:990534/1‑150 (MQ=255)                                            aGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATg                                                                                                          >  1:769517/1‑143 (MQ=255)                                            aGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATg                                                                                                          <  2:769517/143‑1 (MQ=255)                                            aGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAActct                                                                                                   >  2:2285040/1‑150 (MQ=255)                                             gTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACtctc                                                                                                  <  1:2285040/150‑1 (MQ=255)                                                  gTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGgaga                                                                                             <  1:990534/150‑1 (MQ=255)                                                  gTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGgaga                                                                                             <  1:728107/150‑1 (MQ=255)                                                      cGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCCTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGGGAGGta                                                                                         >  1:2002387/1‑149 (MQ=255)                                                       gCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCa                                                                                        >  1:661855/1‑150 (MQ=255)                                                       gCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCAATGCATCTGCTGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCa                                                                                        >  2:1835651/1‑150 (MQ=255)                                                        cTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGaa                                                                                                                 <  2:787077/124‑1 (MQ=255)                                                        cTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGaa                                                                                                                 >  1:787077/1‑124 (MQ=255)                                                         tGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCg                                                                                                             <  1:900895/127‑1 (MQ=255)                                                         tGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCg                                                                                                             >  2:900895/1‑127 (MQ=255)                                                            tCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCa                                                                                   >  1:1787883/1‑150 (MQ=255)                                                                gTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGa                                                                               >  1:2094552/1‑150 (MQ=255)                                                                   aTCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCt                                                                                                                                 <  2:2169358/97‑1 (MQ=255)                                                                   aTCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCt                                                                                                                                 >  1:2169358/1‑97 (MQ=255)                                                                    tCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCAGCTTCGAAGCCGATGGAACTCGCGGAGAGGTCAACCCAATGAGCTa                                                                           >  2:1424597/1‑150 (MQ=255)                                                                        ggAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGc                                                                                                               <  1:502410/110‑1 (MQ=255)                                                                        ggAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGc                                                                                                               >  2:502410/1‑110 (MQ=255)                                                                         gAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAg                                                                      >  2:55011/1‑150 (MQ=255)                                                                          aaGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGATTGAGACTACCTTTACAGCCGCTTCGAAGCAGATGCAACTATCGGAGAGGTCAACCCAATGAGCTATCGAGc                                                                     <  1:55011/150‑1 (MQ=255)                                                                           aGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCg                                                                    >  1:2309424/1‑150 (MQ=255)                                                                              cTTAGGGCTTGCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTGCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGa                                                                 <  1:883321/150‑1 (MQ=255)                                                                                    gCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGa                                                           <  2:2094552/150‑1 (MQ=255)                                                                                         ccATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCg                                                                    >  1:656356/1‑136 (MQ=255)                                                                                         ccATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCg                                                                    <  2:656356/136‑1 (MQ=255)                                                                                           aTGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAgcggc                                                    <  1:1490691/150‑1 (MQ=255)                                                                                           aTGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTCGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAgcggc                                                    <  2:1699344/150‑1 (MQ=255)                                                                                                tctGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTaaa                                               >  2:340049/1‑150 (MQ=255)                                                                                                        acaATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGGGAGGTCAACCTAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTAAAAAATTGcc                                       >  1:1848484/1‑150 (MQ=255)                                                                                                              aatAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTAAAAAATTGCCGGCCAc                                 >  1:1608019/1‑150 (MQ=255)                                                                                                                   tGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTgcttgtgcggcactattgattgtgccgcagaggcatgg                                                                                                         >  1:899920‑M2/1‑35 (MQ=255)                                                                                                                   tGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTgcttgtgcggcactattgattgtgccgcagaggcatgg                                                                                                         <  2:899920‑M2/73‑39 (MQ=255)                                                                                                                     ccGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTAAAAAATTGCCGGCCACGACTTTa                          >  2:1291596/1‑150 (MQ=255)                                                                                                                        cacaAGCGCCGCGAGCAGGGAGCACGCGGTgcttgtgcggcactattgattgtgccgcagaggcatggaaagccctaagtcttcctggatcacttgatcagcggcacgccactgagtttctgcagctcgtcaaagtcgatgtccgcgcag                       <  1:1782070‑M2/150‑121 (MQ=255)                                                                                                                         acaAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTAAAAAATTGCCGGCCa                                  >  2:1346505/1‑138 (MQ=255)                                                                                                                         acaAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTAAAAAATTGCCGGCCa                                  <  1:1346505/138‑1 (MQ=255)                                                                                                                            aGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTAAAAAATTGCCGGCCACGACTTTACGCCttt                   <  1:899836/150‑1 (MQ=255)                                                                                                                                      gCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTAAAAAATTGCCGGCCACGACTTTACGCCTTTTTTACTCgca         <  1:1835651/150‑3 (MQ=255)                                                                                                                                             gCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTAAAAAATTGCCGGCCACGACTTTACGCCTTTTTTACTCGACATTACCg  <  1:2214047/150‑1 (MQ=255)                                                                                                                                              cACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTAAAAAATTGCCGGCCACGACTTTACg                        <  2:2319349/127‑1 (MQ=255)                                                                                                                                              cACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTAAAAAATTGCCGGCCACGACTTTACg                        >  1:2319349/1‑127 (MQ=255)                                                                                                                                                     |                                                                                                                                              CGAAATCTGCGCGGACATCGACTTTGACGAGCTGCAGAAACTCAGTGGCGTGCCGCTGATCAAGTGATCCAGGAAGACTTAGGGCTTTCCATGCCTCTGCGGCACAATCAATAGTGCCGCACAAGCGCCGCGAGCAGGGAGCACGCGGTGCTTGAGACTACCTTTACAGCCGCTTCGAAGCCGATGGAACTCTCGGAGAGGTCAACCCAATGAGCTATCGAGCGGGAGCCAGATAGCGGCGTAAAAAATTGCCGGCCACGACTTTACGCCTTTTTTACTCGACATTACCG  >  NC_002947/4458686‑4458975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.