New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4700790 =	75 (0.850)	5 (0.060)	3/220	NT	6.1%	intergenic (‑57/+93)	kdpD/kdpC	sensor protein/potassium‑transporting ATPase subunit C
	?	NC_002947	4700862 =	87 (1.110)					intergenic (‑129/+21)	kdpD/kdpC	sensor protein/potassium‑transporting ATPase subunit C

TCGGCCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4700950‑4700790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacaGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACCGGCAGCTG  >  NC_002947/4700862‑4701008                                                                                                                                                                                                                                                                                                                      TCGGCCCGCCGGTGGTCAACGTGCTGGCGTTGACCCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAAC                                                                                                                                                                <  1:75140/150‑1 TCGGCCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAAC                                                                                                                                                                >  1:546333/1‑150   GGCCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCC                                                                                                                                                              >  2:1668499/1‑150     CCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGC                                                                                                                                                            <  2:600343/150‑1      CCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCT                                                                                                                                                           <  2:1246110/150‑1       CGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTC                                                                                                                                                          <  1:1668499/150‑1       CGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTC                                                                                                                                                          <  1:2047697/150‑1            GTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACA                                                                                                                                                     <  1:994946/150‑1                             GTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTC                                                                                                                                                          >  2:2303817/1‑128                             GTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTC                                                                                                                                                          <  1:2303817/128‑1                                   CCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGGGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGC                                                                                                                                                            <  2:1512485/120‑1                                   CCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGC                                                                                                                                                            >  1:1512485/1‑120                                         CTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                      >  2:1980213/1‑120                                         CTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                      <  1:1980213/120‑1                                                                                                     GTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCT                                                                                                <  2:160727/114‑1                                                                                                     GTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCT                                                                                                >  1:160727/1‑114                                                                                                           CCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTGAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGGTCAATG                                                      >  1:2047612/1‑150                                                                                                           CCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACAGTCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATG                                                      >  2:2207202/1‑150                                                                                                           CCGCGAATGACGTGGTCGTGACACTAACGTAGTCGCGGTTAAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTCACAATGGCGAGCTTTTCCAAGGCCTGGTTCAAGGCCAGCACGTTGACGACCGGCGGGCCGAGCAATG                                                      >  2:859634/1‑150                                                                                                                                                  tcAACCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAATGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCT               <  1:103787/148‑1                                                                                                                                                      CCCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGGGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGAC           >  2:1471325/1‑150                                                                                                                                                       CCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACC          >  1:308821/1‑150                                                                                                                                                       CCGCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACC          >  1:1625830/1‑150                                                                                                                                                         GCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACCGG        >  2:728294/1‑150                                                                                                                                                         GCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAG                                               >  2:96683/1‑111                                                                                                                                                         GCTCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAG                                               <  1:96683/111‑1                                                                                                                                                           TCCTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACCGGCA      <  1:1712690/150‑1                                                                                                                                                             CTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACCGGCAGC    >  1:1859822/1‑150                                                                                                                                                             CTACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACCGGCAGC    >  1:1075167/1‑150                                                                                                                                                              TACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTG                                      >  2:1152389/1‑115                                                                                                                                                              TACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTG                                      <  1:1152389/115‑1                                                                                                                                                               ACAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACCGGCAGCTG  >  2:1307137/1‑150                                                                                                                                                                CAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGC                                                                                  >  2:1487551/1‑69                                                                                                                                                                CAGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGC                                                                                  <  1:1487551/69‑1                                                                                                                                                                                                                                                                                                                      TCGGCCCGCCGGTGGTCAACGTGCTGGCGTTGAACCAGGCCTTGGAAAAGCTCGCCATTGTCAGGTAATCGAAGCGCTGGCAGGAAGCCTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4700950‑4700790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacaGGCTTCCTGCCAGCGCTTCGATTACCTGACAATGGCGAGCTTTTCCAAGGCCTGGTTCAACGCCAGCACGTTGACCACCGGCGGGCCGATCAATGGGTGGAGGGTGGCCTGTTCCAGCAAGGCTTGCAAGCGCTCGACCGGCAGCTG  >  NC_002947/4700862‑4701008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.