New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 4876493125 (1.420)9 (0.110) 6/222 NT 6.8% intergenic (+286/+151) PP_4284/pucM transporter/5‑hydroxyisourate hydrolase
?NC_002947 = 4876523 136 (1.720)intergenic (+316/+121) PP_4284/pucM transporter/5‑hydroxyisourate hydrolase

CGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4876332‑4876493
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGTATCC  <  NC_002947/4876523‑4876376
                                                                                                                                                                                                                                                                                                                      
CGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAA                                                                                                                                                                  <  1:500719/150‑1
 GTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAA                                                                                                                                                                 >  1:2101452/1‑150
 GTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATAAAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAA                                                                                                                                                                 <  1:1750582/150‑1
    TTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCC                                                                                                                                                              >  2:579412/1‑150
      CGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGC                                                                                                                                                            <  1:1260316/150‑1
      CGCGGGCAAGCGCGCTCCTACAACGGGGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGC                                                                                                                                                            <  2:403998/150‑1
       GCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCT                                                                                                                                                           >  1:1136293/1‑150
       GCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCT                                                                                                                                                           >  1:2162873/1‑150
       GCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCT                                                                                                                                                           <  1:1455890/150‑1
        CGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTC                                                                                                                                                          <  2:2162873/150‑1
         GGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCC                                                                                                                                                         <  1:280603/150‑1
         GGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCC                                                                                                                                                         >  2:1399228/1‑150
           GTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTA                                                                                                                                                       <  2:2101452/150‑1
           GTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTC                                                                                                                                                          <  1:180229/147‑1
           GTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTC                                                                                                                                                          >  2:180229/1‑147
            TAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                      <  1:1039366/150‑1
                  CGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTC                                                                                                                                                          >  2:197416/1‑140
                  CGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTC                                                                                                                                                          <  1:197416/140‑1
                                              ATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACCACGGGCTGTGTCCAACTGTCCACCCCGTGGTAG                                                                                                                    <  1:2108431/150‑1
                                               TACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGG                                                                                                                   >  1:1520611/1‑150
                                                     CCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAAC                                                                                                                                                                <  2:1142779/99‑1
                                                     CCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAAC                                                                                                                                                                >  1:1142779/1‑99
                                                                 CGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAA                                                                                                 <  2:1520611/150‑1
                                                                                       GGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGC                                                                                                                <  1:610091/113‑1
                                                                                       GGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGC                                                                                                                >  2:610091/1‑113
                                                                                               TGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAG                                                                                                                    <  2:2062255/101‑1
                                                                                               TGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAG                                                                                                                    >  1:2062255/1‑101
                                                                                                GGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGC                                                                                                                                                            >  2:1948676/1‑60
                                                                                                GGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGC                                                                                                                                                            <  1:1948676/60‑1
                                                                                                              CGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGTCCAA                                                                                                                                      <  1:114058/68‑1
                                                                                                              CGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGTCCAA                                                                                                                                      >  2:114058/1‑68
                                                                                                                                                     AACCCGCTCCTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGCCTACGGTGAACGGCGGGTAGGGATTGGCCACCAGGGACGGCCTCTTCTCGGGTGTACCCGTTCCTACGGC             >  1:404203/1‑150
                                                                                                                                                       CCCGCTCCTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGGCTCTTCGCGGGTGAACCCGCTCCTACGGCGG           >  1:214606/1‑150
                                                                                                                                                       CCCGCTCCTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGG           >  1:1933108/1‑150
                                                                                                                                                        CCGCTCCTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGG          >  1:1867004/1‑150
                                                                                                                                                         CGCTCCTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGGC         <  1:2252709/150‑1
                                                                                                                                                         CGCTCCTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTGACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGGC         <  1:1787601/150‑1
                                                                                                                                                          GCTCCTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGGCT        <  1:1555935/150‑1
                                                                                                                                                            TCCTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGT      >  2:1295188/1‑150
                                                                                                                                                            TCCTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGAGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTTGCCAGCAGGGCCGGCCTCTTGGCGGGTGAACTTGCTCCGACGGCGGGCTGT      >  2:123347/1‑150
                                                                                                                                                             CCTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCAGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGTA     <  1:2222573/150‑1
                                                                                                                                                              CTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGTAT    <  1:2246616/150‑1
                                                                                                                                                              CTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGTAT    >  2:1145289/1‑150
                                                                                                                                                              CTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGGCTG       <  1:1607660/147‑1
                                                                                                                                                              CTACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGGCTG       >  2:1607660/1‑147
                                                                                                                                                               TACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGTAcc   >  2:2019313/1‑148
                                                                                                                                                               TACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGTATC   >  1:649940/1‑150
                                                                                                                                                               TACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGG                                <  1:348794/121‑1
                                                                                                                                                               TACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGG                                >  2:348794/1‑121
                                                                                                                                                                ACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGTATCC  <  2:1260615/150‑1
                                                                                                                                                                ACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCG                                 >  2:1335906/1‑119
                                                                                                                                                                ACGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCG                                 <  1:1335906/119‑1
                                                                                                                                                                 CGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGGCT        >  1:527930/1‑143
                                                                                                                                                                 CGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGGCT        <  2:527930/143‑1
                                                                                                                                                                                                                                                                                                                      
CGTATTCGCGGGTAAACCCGCTCCTACAACGGTGGTGGACAGTTGGATACAGCCCGCCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCTGCTGGCCAATCCCTACCCGCCGTTCACCGTTGCCGCCACCACCGCATTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4876332‑4876493
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacGACGGGCTGTGTCCAACTGTCCACCCCGTGGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGCGGCAACGGTGAACGGCGGGTAGGGATTGGCCAGCAGGGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGGGCTGTATCC  <  NC_002947/4876523‑4876376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.