New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5048151 =	81 (0.920)	6 (0.070)	6/238	NT	7.6%	intergenic (‑173/+170)	PP_5685/PP_4451	hypothetical protein/hypothetical protein
	?	NC_002947	5048180 =	68 (0.800)					intergenic (‑202/+141)	PP_5685/PP_4451	hypothetical protein/hypothetical protein

AACTTTTGACCGAGTTGTCAAGGCACTTCAAGGTCAAATTTCGCCGGGAAAATGTTATCAAAGATTACTCAGGCCGTCAGAGCAAGCGGAGCGCGCATGCGGGAGGATGGAAGCCCAACGGGCCAAGACGGGCGG‑GCACCGTCAGGCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5048301‑5048151 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttggCCCGTTGGGCTTCCATCCTCCCGCATGCGCGCTCCGCTTGCTCTGACGGCCTGAGTAATCTTTGATAACATTTTCCCGGCGAAATTTGACCTTGAAGTGCCTTGACAACTCGGTCAAAAGTTACCTTTTTTCGCACAAATATTACCTG  >  NC_002947/5048180‑5048327                                                                                                                                                                                                                                                                                                              AACTTTTGACCGAGTTGTCAAGGCACTTCAAGGTCAAATTTCGCCGGGAAAATGTTATCAAAGATTACTCAGGCCGTCAGAGCAAGCGGAGCGCGCATGCGGGAGGATGGAAGCCCAACGGGCCAAGACGGGCGG‑GCACCGTCAGGCTTG                                                                                                                                                       <  1:5041/150‑1    TTTTGACCGAGTTGTCAAGGCACTTCAAGGTCAAATTTCGCCGGGAAAATGTTATCAAAGATTACTCAGGCCGTCAGAGCAAGCGGAGCGCGCATGCGGGAGGATGGAAGCCCAACGGGCCAAGACGGGCGG‑GCACCGTCAGGCTTGGCC                                                                                                                                                    >  2:951090/1‑150        GACCGAGTTGTCAAGGCACTTCAAGGTCAAATTTCGCCGGGAAAATGTTATCAAAGATTACTCAGGCCGTCAGAGCAAGCGGAGCGCGCATGCGGGAGGATGGAAGCCCAACGGGCCAAGACGGGCGG‑GCACCGTCAGGCTTGGCCCGTT                                                                                                                                                <  1:951090/150‑1                    AAGGCACTTCAAGGTCAAATTTCGCCGGGAAAATGTTATCAAAGATTACTCAGGCCGTCAGAGCAAGCGGAGCGCGCATGCGGGAGGATGGAAGCCCAACGGGCCAAGACGGGCGG‑GCACCGTCAGGCTTG                                                                                                                                                       >  1:1809020/1‑131                    AAGGCACTTCAAGGTCAAATTTCGCCGGGAAAATGTTATCAAAGATTACTCAGGCCGTCAGAGCAAGCGGAGCGCGCATGCGGGAGGATGGAAGCCCAACGGGCCAAGACGGGCGG‑GCACCGTCAGGCTTG                                                                                                                                                       <  2:1809020/131‑1                        CACTTCAAGGTCAAATTTCGCCGGGAAAATGTTATCAAAGATTACTCAGGCCGTCAGAGCAAGCGGAGCGCGCATGCGGGAGGATGGAAGCCCAACGGGCCAAGCCTGACGGTGC‑CCGCCCGTCTTGGCCCGTTGGGCTTCCATCCTCCC                                                                                                                                <  2:2287873/150‑1                                                                                                                     AACGGGCCAAGACGGGCGG‑GCACCGTCAGGCTTGGTCCGTTGGGCTTCCATCCTCCCGAATGCGCGCTCCGCTTGCTCTGACGGCCTGAGTAATCTTTGATAACATTTTCCCGGCGAAATTTGACCTTGAAGTGCCTT                                               >  1:1538529/1‑138                                                                                                                     AACGGGCCAAGACGGGCGG‑GCACCGTCAGGCTTGGTCCGTTGGGCTTCCATCCTCCCGAATGCGCGCTCCGCTTGCTCTGACGGCCTGAGTAATCTTTGATAACATTTTCCCGGCGAAATTTGACCTTGAAGTGCCTT                                               <  2:1538529/138‑1                                                                                                                             AAGACGGGCGG‑GCACCGTCAGGCTTGGCCCGTTGGGCTTCCATCCTCCCGCATGCGCGCTCCGC                                                                                                                 >  1:1188935/1‑64                                                                                                                             AAGACGGGCGG‑GCACCGTCAGGCTTGGCCCGTTGGGCTTCCATCCTCCCGCATGCGCGCTCCGC                                                                                                                 <  2:1188935/64‑1                                                                                                                                                      TGGCCCGTTGGGCTTCCATCCTCCCGCATGCGCGCTCCGCTTGCTCTGACGGCCTGAGTAATCTTTGATAACATTTTCCCGGCGAAATTTGACCTTGAAGTGCCTTGACAACTCGGTCAAAAGTTACCTTTTTTCGCACAAATATTACCT   <  1:2081990/150‑1                                                                                                                                                       GGCCCGTTGGGCTTCCATCCTCCCGCATGCGCGCTCCGCTTGCTCTGACGGCCTGAGTAATCTTTGATAACATTTTCCCGGCGAAATTTGACCTTGAAGTGCCTTGACAACTCGGTCAAAAGTTACCTTTTTTCGCACAAATATTACCTG  <  1:1142643/150‑1                                                                                                                                                       GGCCCGTTGGGCTTCCATCCTCCCGCATGCGCGCTCCGCTTGCTCTGACGGCCTGAGTAATCTTTGATAACATTTTCCCGGCGAAATTTGACCTTGAAGTGCCTTGACAACTCGGTCAAAAGTTACCTTTTTTCGCACAAATATTACCTG  <  1:999086/150‑1                                                                                                                                                                                                                                                                                                              AACTTTTGACCGAGTTGTCAAGGCACTTCAAGGTCAAATTTCGCCGGGAAAATGTTATCAAAGATTACTCAGGCCGTCAGAGCAAGCGGAGCGCGCATGCGGGAGGATGGAAGCCCAACGGGCCAAGACGGGCGG‑GCACCGTCAGGCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5048301‑5048151 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttggCCCGTTGGGCTTCCATCCTCCCGCATGCGCGCTCCGCTTGCTCTGACGGCCTGAGTAATCTTTGATAACATTTTCCCGGCGAAATTTGACCTTGAAGTGCCTTGACAACTCGGTCAAAAGTTACCTTTTTTCGCACAAATATTACCTG  >  NC_002947/5048180‑5048327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.