New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 523869191 (1.030)7 (0.080) 6/242 NT 7.3% coding (155/204 nt) PP_5701 hypothetical protein
?NC_002947 = 5238792 88 (1.020)intergenic (+52/‑229) PP_5701/PP_4616 hypothetical protein/hypothetical protein

GAAGGCGACCGATTGCCGCAAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5238540‑5238691
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCCCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTCAGCG  <  NC_002947/5238792‑5238644
                                                                                                                                                                                                                                                                                                             
GAAGGCGACCGATTGCCGCAAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAA                                                                                                                                                         <  1:485449/150‑1
 AAGGCGACCGATTGCCGCAAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAG                                                                                                                                                        <  2:7532/150‑1
                                  ATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCAC                                                                                                                       >  2:1396315/1‑150
                                  ATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCCTTTCGCGGGCACGCCCGCTCCCAC                                                                                                                       >  1:234902/1‑150
                                                                         TTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAG                                                                                                                                                        <  2:97655/78‑1
                                                                         TTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAG                                                                                                                                                        >  1:97655/1‑78
                                                                                 GCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGG                                                                        <  2:324840/150‑1
                                                                                         TCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGC                                                                          <  1:27671/140‑1
                                                                                         TCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGC                                                                          >  2:27671/1‑140
                                                                                                  GATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGGGCGAGCCCGCGAAGAGG                                                       <  2:234902/150‑1
                                                                                                      TCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGG                                                   <  1:1396315/150‑1
                                                                                                                                                     AGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCCCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTCAG    >  2:120751/1‑150
                                                                                                                                                     AGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCCCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCT            >  1:461336/1‑142
                                                                                                                                                     AGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCCCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCT            <  2:461336/142‑1
                                                                                                                                                       GTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCCCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTCAGCG  <  2:2004390/150‑1
                                                                                                                                                       GTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCCCTTCCGGCACGTTAACCAGCCT                           <  2:2204304/125‑1
                                                                                                                                                       GTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCCCTTCCGGCACGTTAACCAGCCT                           >  1:2204304/1‑125
                                                                                                                                                                                                                                                                                                             
GAAGGCGACCGATTGCCGCAAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5238540‑5238691
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCCCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTCAGCG  <  NC_002947/5238792‑5238644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.