New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 523869191 (1.030)7 (0.080) 6/242 NT 7.3% coding (155/204 nt) PP_5701 hypothetical protein
?NC_002947 = 5238792 88 (1.020)intergenic (+52/‑229) PP_5701/PP_4616 hypothetical protein/hypothetical protein

Only 100 of 114 total aligned reads displayed.

GGCGACCGATTGCCGCAAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCA  >  NC_002947/5238543‑5238840
                                                                                                                                                    |                                                                                                                                                     
ggCGACCGATTGCCGCAAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAggg                                                                                                                                                      >  2:1838423/1‑150 (MQ=255)
   gACCGATTGCCGCAAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGggccg                                                                                                                                                   >  1:324840/1‑150 (MQ=255)
    aCCGATTGCCGCAAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGAAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGggccgg                                                                                                                                                  >  1:306898/1‑150 (MQ=255)
     ccGATTGCCGCAAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGggccggc                                                                                                                                                 <  2:402116/150‑1 (MQ=255)
      cGATTGCCGCAAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGggccggcc                                                                                                                                                <  2:1457556/150‑1 (MQ=255)
         ttGCCGCAAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCctct                                                                                                                                             >  1:1514826/1‑150 (MQ=255)
           gCCGCAAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTTATCGCAGCACCTGCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTc                                                                                                                                           <  2:81200/150‑1 (MQ=255)
             cGCAAGGCACCTTGAGGCATGGCACGATTCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTcgc                                                                                                                                         >  2:709232/1‑150 (MQ=255)
             cGCAAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTcgc                                                                                                                                         >  2:2236837/1‑150 (MQ=255)
               cAAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCgg                                                                                                                                       <  2:2050515/150‑1 (MQ=255)
               cAAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCgg                                                                                                                                       <  1:584802/150‑1 (MQ=255)
                               aTGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGgccggccctttcgcgggcacgcccgctcccac                                                                                                                       >  1:234902‑M1/1‑118 (MQ=255)
                                    aCGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCgg                                                                                                                  >  1:1860415/1‑150 (MQ=255)
                                      gATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTc                                                                                                                <  1:1202545/150‑1 (MQ=255)
                                           aTGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTcaccac                                                                                                           >  2:1418727/1‑150 (MQ=255)
                                           aTGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTcaccac                                                                                                           >  2:1418691/1‑150 (MQ=255)
                                            tGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACcaca                                                                                                          >  1:681806/1‑150 (MQ=255)
                                            tGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACcaca                                                                                                          <  2:1860415/150‑1 (MQ=255)
                                                     ggCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTcac                                                                                                              >  1:1804540/1‑137 (MQ=255)
                                                     ggCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTcac                                                                                                              <  2:1804540/137‑1 (MQ=255)
                                                        gcTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTc                                                                                                                                           >  2:1280801/1‑105 (MQ=255)
                                                        gcTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTc                                                                                                                                           <  1:1280801/105‑1 (MQ=255)
                                                        gcTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTAAAGCCt                                                                                              <  2:681806/150‑1 (MQ=255)
                                                              gCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGcaca                                                                                        >  2:469797/1‑150 (MQ=255)
                                                                 tcttctTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGAGGTCGCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTa                                                                                     >  1:2259829/1‑150 (MQ=255)
                                                                   ttcttGAGTCGGCGCTGGTTCATGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTAcc                                                                                   >  2:1340032/1‑150 (MQ=255)
                                                                   ttcttGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTAcc                                                                                   >  2:146043/1‑150 (MQ=255)
                                                                      ttGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCtgt                                                                                <  2:223943/150‑1 (MQ=255)
                                                                        gAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTgg                                                                              <  2:1142122/150‑1 (MQ=255)
                                                                           tcgtcgCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAg                                                                           <  1:623079/150‑1 (MQ=255)
                                                                            cGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGc                                                                          <  1:1886231/150‑1 (MQ=255)
                                                                             ggCGCTGGTTCAGGTGCAGGTGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCg                                                                         >  1:475772/1‑150 (MQ=255)
                                                                             ggCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCg                                                                         >  2:1519149/1‑150 (MQ=255)
                                                                             ggCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCg                                                                         >  2:1401504/1‑150 (MQ=255)
                                                                              gcgcTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGgccggcctcttcgcgggctcgcccgctcccacaggtactgtgcaagtcttgactactgtggtgaccgctgtgggagcgg                                                                        <  2:324840‑M1/150‑80 (MQ=255)
                                                                              gcgcTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCAGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTCGGAGCgg                                                                        >  2:1583630/1‑150 (MQ=255)
                                                                               cgcTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCggg                                                                       <  1:1519149/150‑1 (MQ=255)
                                                                                gcTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTc                                                                                                                <  1:1889195/108‑1 (MQ=255)
                                                                                gcTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTc                                                                                                                >  2:1889195/1‑108 (MQ=255)
                                                                                gcTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCACACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTACCACAGCGGTCACCACAGTAGTCAAGACTTGCAAAGGACCTGGGGGAGCGGGc                                                                      >  1:2229902/1‑150 (MQ=255)
                                                                                 cTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGggccggcc                                                                                                                                                >  2:197385/1‑75 (MQ=255)
                                                                                     ttCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTTGTGTGGGGTTCACGACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGcc                                                                 <  2:1153452/150‑1 (MQ=255)
                                                                                      tCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGtccggccctttcgcgggcacgcccgctcccacaggtactgtgcaagtcttgactactgtggtgaccgctgtgggagc                                                                          >  2:27671‑M1/1‑63 (MQ=255)
                                                                                      tCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGtccggccctttcgcgggcacgcccgctcccacaggtactgtgcaagtcttgactactgtggtgaccgctgtgggagc                                                                          <  1:27671‑M1/140‑78 (MQ=255)
                                                                                        aGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCcgc                                                              >  1:536197/1‑150 (MQ=255)
                                                                                             cAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCACGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAg                                                         <  2:685935/150‑1 (MQ=255)
                                                                                              aGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTcc                                                                                                                          <  1:133380/84‑1 (MQ=255)
                                                                                              aGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTcc                                                                                                                          >  2:133380/1‑84 (MQ=255)
                                                                                              aGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACATCGGTCACCACAGTAGTCAAGACTGGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAgg                                                        <  1:450538/150‑1 (MQ=255)
                                                                                              aGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGACCAGCCTCTTCGCGGACATGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAgg                                                        >  1:870965/1‑150 (MQ=38)
                                                                                               gATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGgccggccctttcgcgggcacgcccgctcccacaggtactgtgcaagtcttgactactgtggtgaccgctgtgggagcgggcgagcccgcgaagagg                                                       <  2:234902‑M1/150‑97 (MQ=255)
                                                                                               gATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGca                                                                                          <  2:1704848/115‑1 (MQ=255)
                                                                                               gATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGca                                                                                          >  1:1704848/1‑115 (MQ=255)
                                                                                                 tGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGcc                                                     <  1:1340032/150‑1 (MQ=255)
                                                                                                  gTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGt                                                                                                                 >  1:2175413/1‑89 (MQ=255)
                                                                                                  gTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCg                                                    <  1:1838423/150‑1 (MQ=255)
                                                                                                  gTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCg                                                    <  2:2155587/150‑1 (MQ=255)
                                                                                                   tCCGCTGAGCCCAGGAACTTCGCATTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCgg                                                   <  2:2224031/150‑1 (MQ=255)
                                                                                                   tCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGtccggccctttcgcgggcacgcccgctcccacaggtactgtgcaagtcttgactactgtggtgaccgctgtgggagcgggcgagcccgcgaagaggccgg                                                   <  1:1396315‑M1/150‑101 (MQ=255)
                                                                                                   tCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAgg                                                        >  1:831078/1‑145 (MQ=255)
                                                                                                   tCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAgg                                                        <  2:831078/145‑1 (MQ=255)
                                                                                                   tCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCgg                                                   >  1:1190221/1‑150 (MQ=255)
                                                                                                     cGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACag                                                                                                         <  2:1226499/94‑1 (MQ=255)
                                                                                                     cGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACag                                                                                                         >  1:1226499/1‑94 (MQ=255)
                                                                                                     cGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGAc                                                 <  2:2004390‑M2/150‑2 (MQ=255)
                                                                                                       cTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGAcct                                               >  2:120751‑M2/1‑147 (MQ=255)
                                                                                                         gAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCAGTCACCACAGTAATCAAGACTTGCACAGTACCTGTGGGAGCGAGCGGGCCCGCGAAAGGGCCGGACCTGc                                             <  1:1583630/150‑1 (MQ=255)
                                                                                                              cAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACa                                        >  2:597782/1‑150 (MQ=255)
                                                                                                               aGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGa                                                                                                <  2:1735941/93‑1 (MQ=255)
                                                                                                               aGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGa                                                                                                >  1:1735941/1‑93 (MQ=255)
                                                                                                               aGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGAcct                                               <  2:461336‑M2/142‑4 (MQ=255)
                                                                                                                     ttCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATcc                                 >  1:476287/1‑150 (MQ=255)
                                                                                                                     ttCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATcc                                 >  1:829727/1‑150 (MQ=255)
                                                                                                                        gCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCCGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCg                              <  1:1273732/150‑1 (MQ=255)
                                                                                                                          aCTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGa                                                                                                >  1:1356412/1‑82 (MQ=255)
                                                                                                                          aCTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGa                                                                                                <  2:1356412/82‑1 (MQ=255)
                                                                                                                          aCTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGc                            >  2:1787784/1‑150 (MQ=255)
                                                                                                                              aGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACCGCGGTCACCACAGGAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCTCCGGCCATg                        >  1:1139749/1‑150 (MQ=255)
                                                                                                                              aGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGAc                                                 <  2:2204304‑M2/125‑2 (MQ=255)
                                                                                                                              aGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGAc                                                 >  1:2204304‑M2/1‑124 (MQ=255)
                                                                                                                                gCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCATAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGc                                                                          <  1:1134373/98‑1 (MQ=255)
                                                                                                                                gCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCATAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGc                                                                          >  2:1134373/1‑98 (MQ=255)
                                                                                                                                    gTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACagta                                                                                                       <  1:1980372/65‑1 (MQ=255)
                                                                                                                                    gTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACagta                                                                                                       >  2:1980372/1‑65 (MQ=255)
                                                                                                                                     ttAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGcc                                                     <  2:1313095/114‑1 (MQ=255)
                                                                                                                                     ttAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCg                                                    <  1:80154/115‑1 (MQ=255)
                                                                                                                                     ttAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCg                                                    >  2:80154/1‑115 (MQ=255)
                                                                                                                                       aaCGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCCTGCATTGAATAGTTCCTGTGGGACCGCTCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGc               <  1:283891/150‑1 (MQ=255)
                                                                                                                                        aCGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCa              <  2:536197/150‑1 (MQ=255)
                                                                                                                                         cGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAg             <  2:829727/150‑1 (MQ=255)
                                                                                                                                             ccGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAgccgc         >  2:1678757/1‑150 (MQ=255)
                                                                                                                                             ccGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAgccgc         >  1:570452/1‑150 (MQ=255)
                                                                                                                                               ggAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCa       >  1:1197986/1‑150 (MQ=255)
                                                                                                                                               ggAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCa       >  1:2196284/1‑150 (MQ=255)
                                                                                                                                                  aGGtccggccctttcgcgggcacgcccgctcccacaggtactgtgcaagtcttgactactgtggtgaccgctgtgggagcgggcgagcccgcgaagaggccggcccttccggcacgttaaccagccttagtgcgaagttcctgggctcag    >  2:120751‑M1/1‑3 (MQ=255)
                                                                                                                                                  aGGtccggccctttcgcgggcacgcccgctcccacaggtactgtgcaagtcttgactactgtggtgaccgctgtgggagcgggcgagcccgcgaagaggccggcccttccggcacgttaaccagccttagtgcgaagttcct            >  1:461336‑M1/1‑3 (MQ=255)
                                                                                                                                                  aGGtccggccctttcgcgggcacgcccgctcccacaggtactgtgcaagtcttgactactgtggtgaccgctgtgggagcgggcgagcccgcgaagaggccggcccttccggcacgttaaccagccttagtgcgaagttcct            <  2:461336‑M1/142‑140 (MQ=255)
                                                                                                                                                    gtccggccctttcgcgggcacgcccgctcccacaggtactgtgcaagtcttgactactgtggtgaccgctgtgggagcgggcgagcccgcgaagaggccggcccttccggcacgttaaccagccttagtgcgaagttcctgggctcagcg  <  2:2004390‑M1/150‑150 (MQ=255)
                                                                                                                                                    gtccggccctttcgcgggcacgcccgctcccacaggtactgtgcaagtcttgactactgtggtgaccgctgtgggagcgggcgagcccgcgaagaggccggcccttccggcacgttaaccagcct                           >  1:2204304‑M1/1‑1 (MQ=255)
                                                                                                                                                    gtccggccctttcgcgggcacgcccgctcccacaggtactgtgcaagtcttgactactgtggtgaccgctgtgggagcgggcgagcccgcgaagaggccggcccttccggcacgttaaccagcct                           <  2:2204304‑M1/125‑125 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
GGCGACCGATTGCCGCAAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCA  >  NC_002947/5238543‑5238840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.