New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5432804	54 (0.610)	4 (0.050)	4/238	NT	6.6%	coding (2508/2529 nt)	hrpB	ATP‑dependent helicase HrpB
	?	NC_002947	= 5432818	61 (0.720)					coding (2494/2529 nt)	hrpB	ATP‑dependent helicase HrpB

GAAGTGATCACGTTCCTATTGAGGCAGGCAGATCGAGCTTCACTGGCCGGGGCAATACGATGAATGGCACGACCACTGACACGTCGTGGCCAGCGCATGATTTTTTCGGCCTGCCGCACTCGGTGGTGTGCATCAGCTCCCTCTCGGCTTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5432651‑5432804 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccGAGGCTACCGCCAGGGCCAAGCCGAGAGGGAGCTGATGCACACCACCGAGTGCGGCAGGCCGAAAAAATCATGCGCTGGCCACGACGTGTCAGTGGTCGTGCCATTCATCGTATTGCCCCGGCCAGTGAAGC  <  NC_002947/5432818‑5432687                                                                                                                                                                                                                                                                                                GAAGTGATCACGTTCCTATTGAGGCAGGCAGATCGAGCTTCACTGGCCGGGGCAATACGATGAATGGCACGACCACTGACACGTCGTGGCCAGCGCATGATTTTTTCGGCCTGCCGCACTCGGTGGTGTGCATCAGCTCCCTCTCGGCTT                                                                                                                                          >  2:1189039/1‑150  AAGTGATCACGTTCCTATTGAGGCAGGCAGATCGAGCTTCACTGGCCGGGGCAATACGATGAATGGCACGACCACTGACACGTCGTGGCCAGCGCATGATTTTTTCGGCCTGCCGCACTCGGTGGTGTGCATCAGCTCCCTCTCGGCTTG                                                                                                                                         <  2:2165104/150‑1  AAGTGATCACGTTCCTATTGAGGCAGGCAGATCGAGCTTCACTGGCCGGGGCAATACGATGAATGGCACGACCACTGACACGTCGTGGCCAGCGCATGATTTTTTCGGCCTGCCGCACTCGGTGGTGTGCATCAGCTCCCTCTCGGCTTG                                                                                                                                         <  2:306127/150‑1   AGTGATCACGTTCCTATTGAGGCAGGCAGATCGAGCTTCACTGGCCGGGGCAATACGATGAATGGCACGACCACTGACACGTCGTGGCCAGCGCATGATTTTTTCGGCCTGCCGCACTCGGTGGTGTGCATCAGCTCCCTCTCGGCTTGG                                                                                                                                        <  1:2318578/150‑1   AGTGATCACGTTCCTATTAAGGCAGGCAGATCGAGCTTCACTGGCCGGGGCAATACGATGAATGGCACGACCACTGACACGTCGTGGCCAGCGCATGATTTTTTCGGCCTGCCGCACTCGGGGGTGTGCATCAGCTCCCTCTCGGCTTGG                                                                                                                                        >  2:2136381/1‑150                                                                          CACTGACACGTCGTGGCCAGCGCATGATTTTTTCGGCCTGCCGCACTCGGTGGTGTGCATCAGCTCCCTCTCGGCTTGGC                                                                                                                                       <  1:1457163/80‑1                                                                          CACTGACACGTCGTGGCCAGCGCATGATTTTTTCGGCCTGCCGCACTCGGTGGTGTGCATCAGCTCCCTCTCGGCTTGGC                                                                                                                                       >  2:1457163/1‑80                                                                                                                                    ATCAGCTCCCTCTCGGCTTGGCCCTGGCGGTAGCCTCGGCCAAGCCGAGAGGGAGCTGATGCACACCACCGAGTGCGGCAGGCCGAAAAAATCATGCGCTGGCCACGACGTGTCAGTGGTCGTGCCATTCATCGTATTGCCCCGGCCAGT       >  2:1172246/1‑150                                                                                                                                        GCTCCCTCTCGGCTTGGCCCTGGCGGTAGCCTCGGCCAAGCCGAGAGGGAGCTGATGCACACCACCGAGTGCGGCAGGCCGAAAAAATCATGCGCTGGCCACGACGTGTCAGTGGTCGTGCCATTCATCGTATTGCCCCGGCCAG        <  1:192303/145‑1                                                                                                                                        GCTCCCTCTCGGCTTGGCCCTGGCGGTAGCCTCGGCCAAGCCGAGAGGGAGCTGATGCACACCACCGAGTGCGGCAGGCCGAAAAAATCATGCGCTGGCCACGACGTGTCAGTGGTCGTGCCATTCATCGTATTGCCCCGGCCAG        >  2:192303/1‑145                                                                                                                                         CTCCCTCTCGGCTTGGCCCTGGCGGTAGCCTCGGCCAAGCCGAGAGGGAGCTGATGCACACCACCGAGTGCGGCAGGCCGAAAAAATCATGCGCTGGCCACGACGTGTCAGTGGTCGTGCCATTCATCGTATTGCCCCGGCCAGTGAAGC  <  1:1172246/150‑1                                                                                                                                                                                                                                                                                                GAAGTGATCACGTTCCTATTGAGGCAGGCAGATCGAGCTTCACTGGCCGGGGCAATACGATGAATGGCACGACCACTGACACGTCGTGGCCAGCGCATGATTTTTTCGGCCTGCCGCACTCGGTGGTGTGCATCAGCTCCCTCTCGGCTTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5432651‑5432804 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccGAGGCTACCGCCAGGGCCAAGCCGAGAGGGAGCTGATGCACACCACCGAGTGCGGCAGGCCGAAAAAATCATGCGCTGGCCACGACGTGTCAGTGGTCGTGCCATTCATCGTATTGCCCCGGCCAGTGAAGC  <  NC_002947/5432818‑5432687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.