| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5918398 | 97 (1.100) | 4 (0.050) | 4/214 | NT | 4.1% | intergenic (+32/+63) | ygiF/PP_5188 | thiamine triphosphatase/AsnC/Lrp family transcriptional regulator |
| ? | NC_002947 | = 5918438 | 104 (1.370) | intergenic (+72/+23) | ygiF/PP_5188 | thiamine triphosphatase/AsnC/Lrp family transcriptional regulator | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCTTGTACGGCGACCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5918233‑5918398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgcGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAAGCAGGCGACGCGGTATCACGCCTTGAGCAGGTGCTTCCAGCCGCGGCTCTGGTCCACCGCCCGAGCCTGTTCGATACGCGCTTCCAGCACTT < NC_002947/5918438‑5918290 GCTTGTACGGCGACCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGCCCATAACCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCT > 1:2260803/1‑150 GTACGGCGACCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGC < 2:589651/150‑1 ACGGCGACCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGG < 1:13048/150‑1 ACGGCGACCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGG < 1:800234/150‑1 ACGGCGACCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGG < 1:540067/150‑1 CGGCGACCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGG < 1:1497765/150‑1 CGGCGACCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTC > 2:357279/1‑145 CGGCGACCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTC < 1:357279/145‑1 GACCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAA > 1:2095146/1‑150 ACCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGAACAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAAC > 1:111959/1‑150 CCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACC > 1:243211/1‑150 CTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCC > 1:709352/1‑150 TGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCG > 2:802322/1‑150 TGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCG > 2:219269/1‑150 GAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCGCCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGC > 2:1563234/1‑150 GAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCCCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGGCAACCCGC > 1:1864264/1‑150 CGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGG > 1:394326/1‑119 CGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGG < 2:394326/119‑1 AGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCGCCTACACCGGCCTCACGCCTGGCGC > 1:343951/1‑150 AGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTCATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGC < 2:855269/150‑1 TGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGG < 2:343951/150‑1 TGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAAC > 1:683869/1‑102 TGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAAC < 2:683869/102‑1 AAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTAC < 1:943243/150‑1 TTCGCGGGTAAACCCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAAGCAGGCGACGCGGTATCACGCCTTGAGCAGGTGCTTCCAGCCGCGGCTCTGGTCCACCGCCCGAGCCTGTTCGATA > 1:660883/1‑150 GCGGGTAAACCCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAAGCAGGCGACGCGGTATCACGCCTTGAGCAGGTGCTTCCAGCCGCGGCTCTGGTCCACCGCCCGAGCCTGTTCGATACGC < 1:1968011/150‑1 GCGGGTAAACCCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAAGCAGGCGACGCGGTATCACGCCTT < 2:257672/95‑1 GCGGGTAAACCCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAAGCAGGCGACGCGGTATCACGCCTT > 1:257672/1‑95 GTAAACCCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAAGCAGGCGACGCGGTATCACGCCTTGAGCAGGTGCTTCCAGCCGCGGCTCTGGTCCACCGCCCGAGCCTGTTCGATACGCGCTT > 1:784798/1‑150 AAACCCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAAGCAGGCGACGCGGTATCACGCCTTGAGCAGGTGCTTCCAGCCGCGGCTCTGGTCCACCGCCCGAGCCTGTTCGATACGCGCTTCC > 2:949513/1‑150 CCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAAGCAGGCGACGCGGTATCACGCCTTGAGCAGGTGCTTCCAGCCGCGGCTCTGGTCCACCGCCCGAGCCTGTTCGATACGCGCTTCCAGCA > 2:1709844/1‑150 CCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAAGCAGGCGACGCGGTATCACGCCTTGAGCAGGTGCTTCCAGCCGCGGCTCTGGTCCACCGCCCGAGCCTGTTCGATACGCGCTTCCAGCA > 1:219269/1‑150 CCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAAGC < 2:199699/63‑1 CCGCGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAAGC > 1:199699/1‑63 CGCGCCTACACCGGCCTCACGCCTGGCGCGAACCGTTGTAGGAGCGGGTTTACCCGCGAAGCAGGCGACGCGGTATCACGCCTTGAGCAGGTGCTTCCAGCCGCGGCTCTGGTCCACCGCCCGAGCCTGTTCGATACGCGCTTCCAGCAC > 1:780941/1‑150 CGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAAGCAGGCGACGCGGTATCACGCCTTGAGCAGGTGCTTCCAGCCGCGGCTCTGGTCCACCGCCCGAGCCTGTTCGATACGCGCTTCCAGCACTT < 1:2118019/150‑1 GCTTGTACGGCGACCTGAAAAAGCTGCACGAGCTGGCCGAGCAGCCCATCAGCGATGAAGTGCTGGAAGCGCGTATCGAACAGGCTCGGGCGGTGGACCAGAGCCGCGGCTGGAAGCACCTGCTCAAGGCGTGATACCGCGTCGCCTGCTTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5918233‑5918398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgcGCCTACACCGGCCTCACGCCTGGCGCGAACCTTTGTAGGAGCGGGTTTACCCGCGAAGCAGGCGACGCGGTATCACGCCTTGAGCAGGTGCTTCCAGCCGCGGCTCTGGTCCACCGCCCGAGCCTGTTCGATACGCGCTTCCAGCACTT < NC_002947/5918438‑5918290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |