New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5919647 = | 100 (1.130) | 6 (0.070) | 6/230 | NT | 6.4% | coding (177/1674 nt) | PP_5190 | type II secretion system protein |
? | NC_002947 | 5919691 = | 83 (1.020) | coding (221/1674 nt) | PP_5190 | type II secretion system protein |
CCGCGACGATGAGGATGCCGTGGCGCTGGGCGAAGGCTGGGGAGATCAGGCTGGTGACCTGGGGCAGGTCGAGTTGCATGGGGTCGATGCGCAGGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5919804‑5919647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggccgACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAGCGCCCAG > NC_002947/5919691‑5919839 CCGCGACGATGAGGATGCCGTGGCGCTGGGCGAAGGCTGGGGAGATCAGGCTGGTGACCTGGGGCAGGTCGAGTTGCATGGGGTCGATGCGCAGGTAGGGTTGGCCGACCATGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGG > 1:21364/1‑150 CGCGACGATGAGGATGCCGTGGCGCTGGGCGAAGGCTGGGGAGATCAGGCTGGTGACCTGGGGCAGGTCGAGTTGCATGGGGTCGATGCGCAGGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGG < 1:280782/150‑1 CGCGACGATGAGGATGCCGTGGCGCTGGGCGAAGGCTGGGGAGATCAGGCTGGTGACCTGGGGCAGGTAGAGTTGCATGGGGTCGATGCGCAGGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGG < 2:1579009/150‑1 CGACGATGAGGATGCCGTGGCGCTGGGCTAAGGCTGGGGAGATCAGGCTGGTGACCTGGGGCAGGTCGAGTTGCATGGGGTCGATGCGCAGGTAGTGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCT < 2:1703819/150‑1 GATGAGGATGCCGTGGCGCTGGGCGAAGGCTGGGGAGATCAGGCTGGTGACCTGGGGCAGGTCGAGTTGCATGGGGTCGATGCGCAGGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTGGCC > 2:2040678/1‑150 AGTTGCATGGGGTCGATGCGCAGGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTG > 1:1741718/1‑83 AGTTGCATGGGGTCGATGCGCAGGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTG < 2:1741718/83‑1 GGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGG < 2:137790/58‑1 GGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGG > 1:137790/1‑58 CAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCC > 1:3786/1‑115 CAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCC < 2:3786/115‑1 AGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCG > 1:209904/1‑150 CCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTGGCCGACAAGGTCGG < 1:288146/47‑1 CCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTGGCCGACAAGGTCGG > 2:288146/1‑47 AAGGTGCTCCAAGTCCAGGGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCC < 2:209904/150‑1 GCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAG > 1:795684/1‑150 GCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAG > 2:2263764/1‑150 GCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAG > 2:907808/1‑150 CTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCTGCCGATGCCTCCAGCGTCACCGTCGCCAGC > 2:552375/1‑150 GGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCA > 1:585011/1‑146 GGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCA < 2:585011/146‑1 GCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAGCGCC < 2:280782/150‑1 GACAAGGGCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAGCGCCCAG < 1:2063633/150‑1 CCGCGACGATGAGGATGCCGTGGCGCTGGGCGAAGGCTGGGGAGATCAGGCTGGTGACCTGGGGCAGGTCGAGTTGCATGGGGTCGATGCGCAGGTAGGGTTGGCCGACCTTGTCGGCCAGCCACTGGCAAAGGTGCTCCAAGTCCAGGGGCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5919804‑5919647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggccgACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCATCCTCATCGTCGCGGCCGATGCCTCCAGCGTCACCGTCGCCAGCGCCCAG > NC_002947/5919691‑5919839 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |