New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5919647 =100 (1.130)6 (0.070) 6/230 NT 6.4% coding (177/1674 nt) PP_5190 type II secretion system protein
?NC_002947 5919691 = 83 (1.020)coding (221/1674 nt) PP_5190 type II secretion system protein

Only 100 of 119 total aligned reads displayed.

CTCAAGCGCGTGCTCCAGGCCCTGCTCGCTGACCAGCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCAT  >  NC_002947/5919501‑5919790
                                                                                                                                                     |                                                                                                                                               
ctgggcgctggcgacggtgacgctggaggcatcggccgcgacgatgaggatgccgtggcgctgggcgaaggctggggagatcaggctggtgacctggggcaggtcgagttgcatggggtcgatgcgcaggtagggttggccgcccttgtc                                                                                                                                                 <  1:2063633‑M1/1‑1 (MQ=255)
 tCAAGCGCGTGCTCCAGGCCCTGCTCGCTGACCAGCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCCGGAAAGCCG‑‑CCAGCA‑CCCCGGcc                                                                                                                                             >  1:1099688/1‑150 (MQ=255)
   ggcgctggcgacggtgacgctggaggcatcggccgcgacgatgaggatgccgtggcgctgggcgaaggctggggagatcaggctggtgacctggggcaggtcgagttgcatggggtcgatgcgcaggtagggttggccgaccttgtCGGc                                                                                                                                              <  2:280782‑M1/4‑1 (MQ=255)
      gctggcgacggtgacgctggaggcatcggcagcgacgatgaggatgccgtggcgctgggcgaaggctggggagatcaggctggtgacctggggcaggtcgagttgcatggggtcgatgcgcaggtagggttggccgaccttgtCGGCCAg                                                                                                                                           >  2:552375‑M1/144‑150 (MQ=255)
       ctggcgacggtgacgctggaggcatcggccgcgacgatgaggatgccgtggcgctgggcgaaggctggggagatcaggctggtgacctggggcaggtcgagttgcatggggtcgatgcgcaggtagggttggccgaccttgtCGGCCAGc                                                                                                                                          >  2:907808‑M1/143‑150 (MQ=255)
       ctggcgacggtgacgctggaggcatcggccgcgacgatgaggatgccgtggcgctgggcgaaggctggggagatcaggctggtgacctggggcaggtcgagttgcatggggtcgatgcgcaggtagggttggccgaccttgtCGGCCAGc                                                                                                                                          >  2:2263764‑M1/143‑150 (MQ=255)
       ctggcgacggtgacgctggaggcatcggccgcgacgatgaggatgccgtggcgctgggcgaaggctggggagatcaggctggtgacctggggcaggtcgagttgcatggggtcgatgcgcaggtagggttggccgaccttgtCGGCCAGc                                                                                                                                          >  1:795684‑M1/143‑150 (MQ=255)
        tggcgacggtgacgctggaggcatcggccgcgacgatgaggatgccgtggcgctgggcgaaggctggggagatcaggctggtgacctggggcaggtcgagttgcatggggtcgatgcgcaggtagggttggccgaccttgtCGGcc                                                                                                                                             <  2:585011‑M1/5‑1 (MQ=255)
        tggcgacggtgacgctggaggcatcggccgcgacgatgaggatgccgtggcgctgggcgaaggctggggagatcaggctggtgacctggggcaggtcgagttgcatggggtcgatgcgcaggtagggttggccgaccttgtCGGcc                                                                                                                                             >  1:585011‑M1/142‑146 (MQ=255)
         gTGCTCCAGGCCCTGCTCGCTGACCAGCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTg                                                                                                                                     >  1:1408410/1‑150 (MQ=255)
           gCTCCAGGCCCTGCTCGCTGACCAGCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGa                                                                                                                                   <  1:1959477/150‑1 (MQ=255)
             tCCAGGCCCTGCTCGCTGACCAGCACCTGCACGCCAGCGATACTCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACt                                                                                                                                 >  2:1695506/1‑150 (MQ=255)
             tCCAGGCCCTGCTCGCTGACCAGCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACt                                                                                                                                 >  1:17339/1‑150 (MQ=255)
              ccAGGCCCTGCTCGCTGACCAGCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACtt                                                                                                                                <  1:1189620/150‑1 (MQ=255)
               cAGGCCCTGCTCGCTGACCAGCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTg                                                                                                                               >  1:2274800/1‑150 (MQ=255)
               cAGGCCCTGCTCGCTGACCAGCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTg                                                                                                                               <  2:1929412/150‑1 (MQ=255)
                acgCCCTGCTCGCTGACCAGCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTgg                                                                                                                              <  1:265710/148‑1 (MQ=255)
                    ccTGCTCGCTGACCAGCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCa                                                                                                                          <  2:746268/150‑1 (MQ=255)
                     cTGCTCGCTGACCAGCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCAc                                                                                                                         <  1:386844/150‑1 (MQ=255)
                      tGCTCGCTGACCAGCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCAcc                                                                                                                        >  1:343188/1‑150 (MQ=255)
                           ggcatcggccgcgacgatgaggatgccgtggcgctgggcgaaggctggggagatcaggctggtgacctggggcaggtcgagttgcatggggtcgatgcgcaggtagggttggccgaccttgtCGGCCAGCCCCTGGACTTGGAGCACCtt                                                                                                                      <  2:209904‑M1/28‑1 (MQ=255)
                           gCTGACCAGCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGc                                                                                                                   <  2:2274800/150‑1 (MQ=255)
                           gCTGACCAGCACCTGCACGCCAGCGATACCCAACAAATAGTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGc                                                                                                                   >  1:450824/1‑150 (MQ=255)
                           gCTGACCAGCACCTGCACGCCAGCCATACCTTGCAAGTACTCGAACACGCCTCTGCCCACCCCGCTAGCCACCAGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGc                                                                                                                   <  2:450824/150‑1 (MQ=255)
                             tGACCAGCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTTTAGCACCTTTGCCa                                                                                                                 <  2:1155002/150‑1 (MQ=255)
                             accccAGCCCCCGCGCGTCAGCAATACCCTGCAAGCACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCGGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCa                                                                                                                 <  2:1300863/147‑1 (MQ=255)
                                 cAGCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCAGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGtgg                                                                                                             >  1:2175757/1‑150 (MQ=255)
                                   gCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGtggct                                                                                                           >  1:961987/1‑150 (MQ=255)
                                    cACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGc                                                                                                                   >  2:462628/1‑141 (MQ=255)
                                      cgacgatgaggatgccgtggcgctgggcgaaggctggggagatcaggctggtgacctggggcaggtcgagttgcatggggtcgatgcgcaggtagggttggccgaccttgtCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGtggct                                                                                                           >  1:209904‑M1/112‑150 (MQ=255)
                                      ccTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGtggctggc                                                                                                        <  1:1326838/150‑1 (MQ=255)
                                       cTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGc                                                                                                                                              >  1:1862091/1‑111 (MQ=255)
                                       cTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGc                                                                                                                                              <  2:1862091/111‑1 (MQ=255)
                                       cTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGcc                                                                                                       >  1:1463367/1‑150 (MQ=255)
                                        tGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCg                                                                                                      >  1:925741/1‑150 (MQ=255)
                                         gCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGa                                                                                                     >  1:856903/1‑150 (MQ=255)
                                            cGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACaa                                                                                                  <  2:856903/150‑1 (MQ=255)
                                             gCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCCGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAg                                                                                                 >  1:403607/1‑150 (MQ=255)
                                             gCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAg                                                                                                 <  2:925741/150‑1 (MQ=255)
                                                   gATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGc                                                                                           <  1:356001/150‑1 (MQ=255)
                                                      aCCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCaa                                                                                        <  1:1900672/150‑1 (MQ=255)
                                                        ccTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAAcc                                                                                      >  1:38279/1‑150 (MQ=255)
                                                        ccTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAAcc                                                                                      <  2:343188/150‑1 (MQ=255)
                                                        ccTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAAcc                                                                                      <  2:583767/150‑1 (MQ=255)
                                                         cTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAAccc                                                                                     >  1:1133076/1‑150 (MQ=255)
                                                          tGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCaa                                                                                        >  2:2121890/1‑146 (MQ=255)
                                                          tGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCaa                                                                                        <  1:2121890/146‑1 (MQ=255)
                                                               gTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACACGGTCGGCCAACCCTACCTg                                                                               >  2:496629/1‑150 (MQ=255)
                                                               gTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTg                                                                               <  1:685140/150‑1 (MQ=255)
                                                                  cTCGAACCCACCGATGCCCACCCCGCTAGCCACCCGCTGGAGCACACCACCACGTGAAGC‑‑AGCAGGCCGATGCTACA‑CCCCAGCCAGCCCCTTTACTTGCAGCACCTTTGCCAGCGGCTGGCCTACAAGGTCGGCCAACCCTACCTgcgc                                                                            <  1:1695506/150‑1 (MQ=255)
                                                                   tCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCg                                                                                                                                                >  2:794338/1‑81 (MQ=255)
                                                                   tCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCa                                                                           >  2:48019/1‑150 (MQ=255)
                                                                   tCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCa                                                                           >  1:1640509/1‑150 (MQ=255)
                                                                     gAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATc                                                                         <  1:48019/150‑1 (MQ=255)
                                                                       acacGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCATCCCCTGGACTTGGAGCACCTTTGCCCGTGCCTGGCCTGCAAGTTCGTCCAACGCTACCTGCGCATCGa                                                                       >  1:520585/1‑150 (MQ=255)
                                                                         acGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTTGCTGGCCGACAATGCCGGCCAACCCTACCTGCGCATCGAcc                                                                     >  2:1192080/1‑150 (MQ=255)
                                                                          gggagatcaggctggtgacctggggcaggtcgagttgcatggggtcgatgcgcaggtagggttggccgaccttgtCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGtggctg                                                                                                          <  2:3786‑M1/40‑1 (MQ=255)
                                                                          cttctcTGCCCACCACGCGAGCGACCCCCTGAAGCACATCGCCGCCTGCAGCCGGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTAACTGCGCATCGAccc                                                                    <  2:361060/145‑1 (MQ=255)
                                                                           gccgcTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGtgg                                                                                                             >  2:4764/1‑108 (MQ=255)
                                                                           gccgcTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGtgg                                                                                                             <  1:4764/108‑1 (MQ=255)
                                                                             cgcTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCAt                                                                 >  2:122010/1‑150 (MQ=255)
                                                                              gcTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATg                                                                <  2:1408410/150‑1 (MQ=255)
                                                                                   ccACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCACCCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAAc                                                            <  1:30942/150‑1 (MQ=255)
                                                                                   ccACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGtggctgg                                                                                                         <  2:2001111/104‑1 (MQ=255)
                                                                                   ccACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGtggctgg                                                                                                         >  1:2001111/1‑104 (MQ=255)
                                                                                   ccACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACt                                                           <  2:403607/150‑1 (MQ=255)
                                                                                    cACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTAGCCAACCACGACGGCCAACCCTACTGTCGCTCCTACCCCATGCAACTc                                                          >  2:21364/1‑150 (MQ=255)
                                                                                     aCCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCg                                                         >  1:1763422/1‑150 (MQ=255)
                                                                                       cccGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGtggct                                                                                                           <  1:1204501/98‑1 (MQ=255)
                                                                                       cccGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGtggct                                                                                                           >  2:1204501/1‑98 (MQ=255)
                                                                                       cccGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGAc                                                       <  2:829799/150‑1 (MQ=255)
                                                                                       cccGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGAc                                                       <  1:812900/150‑1 (MQ=255)
                                                                                           cTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGCAGATCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGc                                                   <  1:1192080/150‑1 (MQ=255)
                                                                                                cACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAg                                              >  2:1388124/1‑150 (MQ=255)
                                                                                                cACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAg                                              <  1:2159156/150‑1 (MQ=255)
                                                                                                cACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAg                                              <  2:1900337/150‑1 (MQ=255)
                                                                                                cACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAg                                              >  2:940552/1‑150 (MQ=255)
                                                                                                   ccGCTGGAGCACATCTCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTc                                           >  1:1330417/1‑150 (MQ=255)
                                                                                                         gAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGAccc                                                                    <  1:412460/119‑1 (MQ=255)
                                                                                                         gAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGAccc                                                                    >  2:412460/1‑119 (MQ=255)
                                                                                                         gAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGc                                     <  1:421998/150‑1 (MQ=255)
                                                                                                           gCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCt                                   >  1:1001521/1‑150 (MQ=255)
                                                                                                               aTCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGAtc                               >  1:2040678/1‑150 (MQ=255)
                                                                                                               aTCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGAtc                               >  2:2178746/1‑150 (MQ=255)
                                                                                                                   ccgccTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCt                                                     >  2:1552399/1‑124 (MQ=255)
                                                                                                                   ccgccTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCt                                                     <  1:1552399/124‑1 (MQ=255)
                                                                                                                       cTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATg                                                                >  1:1793352/1‑109 (MQ=255)
                                                                                                                       cTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATg                                                                <  2:1793352/109‑1 (MQ=255)
                                                                                                                           aGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCgg                                                                                            <  2:2247899/77‑1 (MQ=255)
                                                                                                                           aGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCgg                                                                                            >  1:2247899/1‑77 (MQ=255)
                                                                                                                             ccTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGc                 >  1:1518047/1‑150 (MQ=255)
                                                                                                                              cTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGcc                <  2:2175757/150‑1 (MQ=255)
                                                                                                                                ggAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCa              <  2:1640509/150‑1 (MQ=255)
                                                                                                                                       cg‑‑ccAGCA‑CCCCGGCCAGCCCCTGGACTTGGCGCTCCTTTGCCAGTGGATGGCCGACAAGGGCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCAc       <  2:1715525/150‑1 (MQ=255)
                                                                                                                                       cg‑‑ccAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCCGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCAc       <  1:2221874/150‑1 (MQ=255)
                                                                                                                                        g‑‑ccAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGATCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCCGCGCCACg      >  2:36381/1‑150 (MQ=255)
                                                                                                                                           ccgaccttgtCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGtgg                                                                                                             >  2:288146‑M1/11‑47 (MQ=255)
                                                                                                                                           ccgaccttgtCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGtgg                                                                                                             <  1:288146‑M1/37‑1 (MQ=255)
                                                                                                                                           ccAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCt                                                                                >  1:1350642/1‑75 (MQ=255)
                                                                                                                                            cAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGc    <  1:1388124/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                               
CTCAAGCGCGTGCTCCAGGCCCTGCTCGCTGACCAGCACCTGCACGCCAGCGATACCCTGCAAGTACTCGAACACGCCGCTGCCCACCCCGCTAGCCACCCGCTGGAGCACATCGCCGCCTGCAGCCTGGAAAGCCG‑‑CCAGCA‑CCCCGGCCAGCCCCTGGACTTGGAGCACCTTTGCCAGTGGCTGGCCGACAAGGTCGGCCAACCCTACCTGCGCATCGACCCCATGCAACTCGACCTGCCCCAGGTCACCAGCCTGATCTCCCCAGCCTTCGCCCAGCGCCACGGCAT  >  NC_002947/5919501‑5919790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.