New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6158420	90 (1.020)	5 (0.060)	5/230	NT	5.4%	intergenic (+86/‑21)	PP_5401/PP_5739	hypothetical protein/hypothetical protein
	?	NC_002947	= 6158429	92 (1.130)					intergenic (+95/‑12)	PP_5401/PP_5739	hypothetical protein/hypothetical protein

TGAATTCATACGTCGGGCACGTTCGCAAATTGCTGGGAGAGATGATTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACCCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6158264‑6158420 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgccgTGCTGCGGC‑CGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAACCCGAAAGCGCCTGGTAGCTACTCAGTCAAAAGGTGGGCCATTATTAATCATCTCTCCCAGCAATTTGCGAACGT  <  NC_002947/6158429‑6158282                                                                                                                                                                                                                                                                                                                    TGAATTCATACGTCGGGCACGTTCGCAAATTGCTGGGAGAGATGATTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAAC                                                                                                                                                              <  1:1146550/150‑1  GAATTCATACGTCGGGCACGTTCGCAAATTGCTGGGAGAGATGATTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACC                                                                                                                                                             <  1:372669/150‑1   AATTCATACGTCGGGCACGTTCGCAAATTGCTGGGAGAGATGATTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACCC                                                                                                                                                            >  2:1475941/1‑150   AATTCATACGTCGGGCACGTTCGCAAATTGCTGGGAGAGATGATTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACC                                                                                                                                                             >  2:1641848/1‑149   AATTCATACGTCGCGCACGTTCGCAAATTGCTGGGAGAGATGATTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACC                                                                                                                                                             <  1:1641848/149‑1        ATACGTCGGGCACGTTCGCAAATTGCTGGGAGAGATGATTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACCCTGCCG                                                                                                                                                       >  1:1172442/1‑150                       TCGCAAATTGCTGGGAGAGATGATTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACCCTGCCGTGCTGCGGC‑CGGCAG                                                                                                                                       <  2:2320508/150‑1                                                                                            GGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACCCTGCCGTGCTGCGGC‑CGGCAGGGTT                                                                                                                                   <  2:969712/85‑1                                                                                            GGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACCCTGCCGTGCTGCGGC‑CGGCAGGGTT                                                                                                                                   >  1:969712/1‑85                                                                                                                                    GCACAATCCTTGGAAGAACCCTGCCG‑GCCGCAGCACGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTT                                                                                  >  1:218517/1‑94                                                                                                                                    GCACAATCCTTGGAAGAACCCTGCCG‑GCCGCAGCACGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTT                                                                                  <  2:218517/94‑1                                                                                                                                                     ACCCTGCCGTGCTGCGGC‑CGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAACCCGAAAGCGCCTGGTAGCTACTCAGTCAAAAGGTGGGCCATTATTAATCATCTCTCCCAGCAATTTG         <  2:1950583/150‑1                                                                                                                                                     ACCCTGCCGTGCTGCGGC‑CGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAACCCGAAAGCGCCTGGTAGCTACTCAGTCAAAAGGTGGGCCATTA                                 <  2:993873/126‑1                                                                                                                                                     ACCCTGCCGTGCTGCGGC‑CGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAACCCGAAAGCGCCTGGTAGCTACTCAGTCAAAAGGTGGGCCATTA                                 >  1:993873/1‑126                                                                                                                                                     ACCCTGCCGTGCTGCGGC‑CGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAAT                                                                                             <  1:521587/66‑1                                                                                                                                                     ACCCTGCCGTGCTGCGGC‑CGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAAT                                                                                             >  2:521587/1‑66                                                                                                                                                       CCTGCCGTGCTGCGGC‑CGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAACCCGAAAGCGCCTGGTAGCTACTCAGTCAAAAG                                            >  2:1954408/1‑113                                                                                                                                                       CCTGCCGTGCTGCGGC‑CGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAACCCGAAAGCGCCTGGTAGCTACTCAGTCAAAAG                                            <  1:1954408/113‑1                                                                                                                                                            CGTGCTGCGGC‑CGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAACCCGAAAGCGCCTGGTAGCTACTCAGTCAAAAGGTGGGCCATTATTAATCATCTCTCCCAGCAATTTGCGAACGT  >  1:2298212/1‑150                                                                                                                                                                                                                                                                                                                    TGAATTCATACGTCGGGCACGTTCGCAAATTGCTGGGAGAGATGATTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACCCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6158264‑6158420 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgccgTGCTGCGGC‑CGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAACCCGAAAGCGCCTGGTAGCTACTCAGTCAAAAGGTGGGCCATTATTAATCATCTCTCCCAGCAATTTGCGAACGT  <  NC_002947/6158429‑6158282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.