New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3523858	NA (NA)	7 (0.090)	9/224	NT	NA	coding (528/1533 nt)	PP_3114	transposase
	?	NC_002947	= 3523866	NA (NA)					coding (536/1533 nt)	PP_3114	transposase

CATGTTCGCAAGGTGTACGGCTGCCGGGACTGCGAGTCAGCGCCCGTAACGGCGGACAAGCCCGCCCAGATGATCGAGAAAAGCATGGCCAGCCCGAGTGTGCTGGCCATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCAC  >  NC_002947/3523766‑3523915                                                                                             |                                                          aaggtgcGCAAGGTGTACTGCTGCCGGGACTGCGAGTCAGCGCCCGTAACGGCGGACAAGCCCGCCCAGATGATCGAGAAAAGCATGGCCAGCCCGAGTGTGCTGGCCATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCAc  <  1:1563235/144‑1 (MQ=0)                                                                                             |                                                          CATGTTCGCAAGGTGTACGGCTGCCGGGACTGCGAGTCAGCGCCCGTAACGGCGGACAAGCCCGCCCAGATGATCGAGAAAAGCATGGCCAGCCCGAGTGTGCTGGCCATGCTGCTGACCACCAAATACGTAGACGGCTTGCCGCTTCAC  >  NC_002947/3523766‑3523915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.