New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 603652 =88 (1.000)6 (0.070) 6/230 NT 7.1% intergenic (+45/‑47) ribAB‑I/ribH bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase
?NC_002947 603676 = 75 (0.920)intergenic (+69/‑23) ribAB‑I/ribH bifunctional 3,4‑dihydroxy‑2‑butanone 4‑phosphate synthase/GTP cyclohydrolase II/6,7‑dimethyl‑8‑ribityllumazine synthase

GCCTGATGAGTTCGCCGATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGCCGTTGATGCCCTGGTA  >  NC_002947/603528‑603821
                                                                                                                                                    |                                                                                                                                                 
gcCTGATGAGTTCGCCGATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGct                                                                                                                                                  >  2:737847/1‑150 (MQ=255)
gcCTGATGAGTTCGCCGATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGct                                                                                                                                                  >  1:1489474/1‑150 (MQ=255)
 ccTGATGAGTTCGCCGATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGctc                                                                                                                                                 <  2:1836438/150‑1 (MQ=255)
   tgatgaGTTCGCCGATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCtt                                                                                                                                               <  2:774499/150‑1 (MQ=255)
   tgatgaGTTCGCCGATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCtt                                                                                                                                               >  2:1585015/1‑150 (MQ=255)
    tatgaGTTCGCCGATGAAGTCCAACGCGGCGTCCGGATCCGTTCTGGCAGTTGCCGAATCCGTGCCCTCCGAGTGACATGAGCCGTCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTg                                                                                                                                              <  2:489736/149‑1 (MQ=255)
    gatgaGTTCGCCGATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTg                                                                                                                                              <  2:2190147/150‑1 (MQ=255)
           tCGCCGATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGATGCGGCATTGACTCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATga                                                                                                                                       <  2:1754696/150‑1 (MQ=255)
             gCCGATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATgaga                                                                                                                                     <  1:28064/150‑1 (MQ=255)
                  tGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATc                                                                                                                                <  1:1646752/150‑1 (MQ=255)
                   gAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCg                                                                                                                               <  1:737847/150‑1 (MQ=255)
                     aGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGa                                                                                                                             <  2:1489474/150‑1 (MQ=255)
                     aGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGa                                                                                                                             <  1:762518/150‑1 (MQ=255)
                      gTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGaa                                                                                                                            <  2:1213469/150‑1 (MQ=255)
                             gcgATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGGTGAGAATATCGGAATGGCCCt                                                                                                                     >  1:1217284/1‑150 (MQ=255)
                             gcgATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGCGAATATCGGAATGACGCt                                                                                                                     >  1:1217163/1‑150 (MQ=255)
                                     cGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCa                                                                                                             >  2:216890/1‑150 (MQ=255)
                                            gATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAgg                                                                                                      >  2:1925195/1‑150 (MQ=255)
                                            gATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAgg                                                                                                      >  2:1291430/1‑150 (MQ=255)
                                             aTCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGt                                                                                                     >  1:1999983/1‑150 (MQ=255)
                                              tCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTa                                                                                                    <  1:1925195/150‑1 (MQ=255)
                                               cTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTAc                                                                                                   >  1:667650/1‑150 (MQ=255)
                                                 ggAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCt                                                                                                 >  1:1092025/1‑150 (MQ=255)
                                                  gAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTTTGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCtt                                                                                                >  2:1828238/1‑150 (MQ=255)
                                                      ttGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTc                                                                                               <  2:1246189/147‑1 (MQ=255)
                                                      ttGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTc                                                                                               >  1:1246189/1‑147 (MQ=255)
                                                      ttGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATc                                                                                            >  1:1114683/1‑150 (MQ=255)
                                                      ttGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATc                                                                                            <  2:630269/150‑1 (MQ=255)
                                                      ttGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATc                                                                                            >  1:263665/1‑150 (MQ=255)
                                                      ttGTAGAATACGTGCCCTCCGAGTGACGTGAGGCGGCATGGACGGCCTCTGCTCGAGTCCAGGCCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATc                                                                                            <  2:298349/150‑1 (MQ=255)
                                                        gTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATAGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGc                                                                                          >  2:2281370/1‑150 (MQ=255)
                                                         tAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCGGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCGCTTGAAGATGAGAATATCGGAAGGACCCTGAAGACCATCGAAGGTACCTTCATCGcc                                                                                         >  2:1856773/1‑150 (MQ=255)
                                                            aaTACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGccccc                                                                                      <  2:1928119/150‑1 (MQ=255)
                                                              tACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCaa                                                                                    <  2:1092025/150‑1 (MQ=255)
                                                                   gCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATgag                                                                                                                                      >  2:1486787/1‑95 (MQ=255)
                                                                   gCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATgag                                                                                                                                      <  1:1486787/95‑1 (MQ=255)
                                                                    gatgaaggtaccttcgatggtcttcagggtcattccgatattctcatcttcaagagcgaggccgcttgtatgcggcctcgCTCTTGaa                                                                                                                                            >  2:981987‑M2/81‑88 (MQ=255)
                                                                    gatgaaggtaccttcgatggtcttcagggtcattccgatattctcatcttcaagagcgaggccgcttgtatgcggcctcgCTCTTGaa                                                                                                                                            <  1:981987‑M2/8‑1 (MQ=255)
                                                                     ccTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCACCCCCAATGGTCGc                                                                             >  2:1334411/1‑150 (MQ=255)
                                                                     ccTCCGAGTGACTTGAGGCGGCATTGACGCAATCTGCTAGCGTCCAGACCACTGGCAGCACTGCGGGAGAGCGGCCTCGCGTTGTGAGAGGAGAGTGTGGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGc                                                                             >  2:265218/1‑150 (MQ=255)
                                                                      cTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCAt                                                                                                            >  1:1538807/1‑118 (MQ=255)
                                                                      cTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCAt                                                                                                            <  2:1538807/118‑1 (MQ=255)
                                                                          gAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGc                                                                        <  2:620122/150‑1 (MQ=255)
                                                                          gAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGc                                                                        <  2:667650/150‑1 (MQ=255)
                                                                             tGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGTAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCttt                                                                     <  2:263665/150‑1 (MQ=255)
                                                                                cTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTtggt                                                                  <  1:216890/150‑1 (MQ=255)
                                                                                 ttGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCaaa                                                                                   >  1:2273896/1‑132 (MQ=255)
                                                                                 ttGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCaaa                                                                                   <  2:2273896/132‑1 (MQ=255)
                                                                                 ttGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTtggtg                                                                 <  2:1999983/150‑1 (MQ=255)
                                                                                 ttGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTtggtg                                                                 >  1:945476/1‑150 (MQ=255)
                                                                                     ggcggcATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCAt                                                                                                            >  2:2117686/1‑103 (MQ=255)
                                                                                     ggcggcATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCAt                                                                                                            <  1:2117686/103‑1 (MQ=255)
                                                                                     ggcggcATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTg                                                             <  1:954603/150‑1 (MQ=255)
                                                                                     ggcggcATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTg                                                             >  2:1979456/1‑150 (MQ=255)
                                                                                     ggcggcATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTg                                                             <  2:945476/150‑1 (MQ=255)
                                                                                      gcggcATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGaa                                                                                                        >  1:1999162/1‑106 (MQ=255)
                                                                                      gcggcATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGaa                                                                                                        <  2:1999162/106‑1 (MQ=255)
                                                                                      gcggcATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGAAGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTgg                                                            <  2:774923/150‑1 (MQ=255)
                                                                                          cATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGc                                                        <  1:1585015/150‑1 (MQ=255)
                                                                                               aCGCCCTCTGCTCGATTCCAGACCCCTGTCCAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGTTACCTTCATCGCCCCCAAATGTCGCTATGCTTTGGTGGTTGGCCGCTTCaa                                                   <  1:408882/150‑1 (MQ=255)
                                                                                               aCGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGc                                                           >  2:1670787/1‑142 (MQ=255)
                                                                                               aCGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGc                                                           <  1:1670787/142‑1 (MQ=255)
                                                                                                 gCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTtgg                                                                   >  2:1087389/1‑132 (MQ=255)
                                                                                                 gCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTtgg                                                                   <  1:1087389/132‑1 (MQ=255)
                                                                                                 gCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACa                                                 >  2:2146355/1‑150 (MQ=255)
                                                                                                 gCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACa                                                 >  1:1994235/1‑150 (MQ=255)
                                                                                                     tctGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGaa                                                                                                                            <  1:1568035/71‑1 (MQ=255)
                                                                                                     tctGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGaa                                                                                                                            >  2:1568035/1‑71 (MQ=255)
                                                                                                      ctGCTAGAGTCCTGACCCCTGGCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGCTAGGCGCATCTGCTGCGCTCTGAAGACCATCGAAGTTACCTTACTAGCCCCCCCAGGTTGCGCTGCTTGGGTGGTTGGCCGCTTCAACAGCTTc                                            <  1:2281370/150‑1 (MQ=255)
                                                                                                            gAGTCCAGACCCCTGTGGAGGCCGCTTGTATGTGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTc                                      <  2:543273/150‑1 (MQ=255)
                                                                                                            gAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTc                                      >  2:1880393/1‑150 (MQ=255)
                                                                                                              gTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTTGCTCTTGAAGGTGAGAATGTCAAAATGAGCCTGAAGACCATCGAAGGTACCTTGATCGCCCCCAAAGCTCGCTGTGCTTTGGTGGTTGGTCGCTTTAACAGTTTCGTTGACGa                                    >  2:1147266/1‑150 (MQ=255)
                                                                                                              gTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGa                                    >  2:1372260/1‑150 (MQ=255)
                                                                                                               tCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTtggt                                                                  >  2:1350900/1‑119 (MQ=255)
                                                                                                               tCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTtggt                                                                  <  1:1350900/119‑1 (MQ=255)
                                                                                                                 cAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCTAAGGTACCTTCATCGcccc                                                                                       >  1:297515/1‑96 (MQ=255)
                                                                                                                 cAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAAGGACCCTGAAGACCATCTAAGGTACCTTCATCGcccc                                                                                       <  2:297515/96‑1 (MQ=255)
                                                                                                                  aGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCaaa                                                                                   >  2:419185/1‑99 (MQ=255)
                                                                                                                  aGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCaaa                                                                                   <  1:419185/99‑1 (MQ=255)
                                                                                                                    ttcaagagCGAGGCCGCATACAAGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATc                                                                                            <  1:981987‑M1/80‑1 (MQ=255)
                                                                                                                    ttcaagagCGAGGCCGCATACAAGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATc                                                                                            >  2:981987‑M1/9‑88 (MQ=255)
                                                                                                                       ccTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTgg                            <  2:2117838/149‑1 (MQ=255)
                                                                                                                       ccTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTgg                            >  1:2117838/1‑149 (MQ=255)
                                                                                                                        cTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTa                          >  1:2143895/1‑150 (MQ=255)
                                                                                                                            CGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCg                      >  1:1979456‑M1/1‑150 (MQ=255)
                                                                                                                             gaggccgcatacaagcggcctcgCTCTTGAAGATGAGAATATCg                                                                                                                               <  2:1788980‑M2/21‑1 (MQ=255)
                                                                                                                             gaggccgcatacaagcggcctcgCTCTTGAAGATGAGAATATCg                                                                                                                               >  1:1788980‑M2/24‑44 (MQ=255)
                                                                                                                               ggccgcatacaagcggcctcgCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTtg                                                                    >  2:2032789‑M2/22‑101 (MQ=255)
                                                                                                                               ggccgcatacaagcggcctcgCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTtg                                                                    <  1:2032789‑M2/80‑1 (MQ=255)
                                                                                                                                  CGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGCCg                <  2:1984628‑M1/150‑1 (MQ=255)
                                                                                                                                   gcgtGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAAGTACCTTCATCGCCCCCAAAGGTCGCTATACTTTGGTGGTTGTCCGCTTCAACAGCTTCGTTTTCGAAAGCCTGGTAAGCGGTGCCGt               >  2:1103612/4‑150 (MQ=255)
                                                                                                                                   GCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGCCGt               <  2:1621801‑M1/150‑1 (MQ=255)
                                                                                                                                   GCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGCCGt               <  1:1798939‑M1/150‑1 (MQ=255)
                                                                                                                                          tGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGccc                                                                                        >  2:2184643/1‑70 (MQ=255)
                                                                                                                                          tGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGccc                                                                                        <  1:2184643/70‑1 (MQ=255)
                                                                                                                                          tGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGCCGTTGATGcc        >  1:2099023/1‑150 (MQ=255)
                                                                                                                                            cggcctcgCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGCCGTTGATGCCCt      <  1:1828238‑M2/142‑1 (MQ=255)
                                                                                                                                              gcctcgCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGCCGTTGATGCCCTgg    <  2:1994235‑M2/144‑1 (MQ=255)
                                                                                                                                                ctcgCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGCCGTTGATGCCCTGGTa  >  1:482256‑M2/5‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                 
GCCTGATGAGTTCGCCGATGAAGTTCAACGCGATATCCGGATTCGATCTGGAAGTTGTAGAATACGTGCCCTCCGAGTGACTTGAGGCGGCATTGACGCCCTCTGCTCGAGTCCAGACCCCTGTCGAGGCCGCTTGTATGCGGCCTCGCTCTTGAAGATGAGAATATCGGAATGACCCTGAAGACCATCGAAGGTACCTTCATCGCCCCCAAAGGTCGCTATGCTTTGGTGGTTGGCCGCTTCAACAGCTTCGTTGTCGAAAGCCTGGTAAGCGGTGCCGTTGATGCCCTGGTA  >  NC_002947/603528‑603821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.