New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 3523465NA (NA)9 (0.110) 6/236 NT NA coding (135/1533 nt) PP_3114 transposase
?NC_002947 = 3523493 NA (NA)coding (163/1533 nt) PP_3114 transposase

GACCGAGCAGACTGGCGATGCGGCGACACCACAGTTGCCACTCTTCGACGAAGCGGAAAGCCTGGCCGAGCCTTTGGATGAGGCTGACGACGAAGAAGTCGTTGCGCCAACCAAACGCCGTGGCAAGCGCAAGCCGCTGCCAGCTGATTT  >  NC_002947/3523483‑3523632
          |                                                                                                                                           
gtgcgcgCAGACTGGCGCTGAGACGACACCAAAGTTGCCCCCCTTAGACGACGCGGATCGCATGTCCTCCCCAATTAATGAGTATGACGGTGAAGAAGTCGTTGCGCCAACCAAACGCCGTGGCAAGCGCAAGCCGCTGCCAGCTGAttt  <  2:2239300/144‑1 (MQ=0)
          |                                                                                                                                           
GACCGAGCAGACTGGCGATGCGGCGACACCACAGTTGCCACTCTTCGACGAAGCGGAAAGCCTGGCCGAGCCTTTGGATGAGGCTGACGACGAAGAAGTCGTTGCGCCAACCAAACGCCGTGGCAAGCGCAAGCCGCTGCCAGCTGATTT  >  NC_002947/3523483‑3523632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.