New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5698783 =	65 (0.740)	9 (0.120)	9/214	NT	13.8%	intergenic (+17/‑150)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	5698866 =	56 (0.740)					intergenic (+100/‑67)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein

CCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTACCA  >  NC_002947/5698718‑5699015                                                                                                                                                     |                                                                                                                                                      ccTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAaga                                                                                                                                                      <  1:1988796/150‑1 (MQ=255) ccTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAaga                                                                                                                                                      >  2:767184/1‑150 (MQ=255)   tGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAgg                                                                                                                                                    >  2:700747/1‑150 (MQ=255)    gggTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGc                                                                                                                                                   <  2:1707444/150‑1 (MQ=255)       tGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCt                                                                                                                                                <  1:767184/150‑1 (MQ=255)            tGGCACAGAACGAAGACCTGCCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACCACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAAt                                                                                                                                           <  2:1112387/150‑1 (MQ=255)               cacaGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAAtccc                                                                                                                                        >  2:1766635/1‑150 (MQ=255)                acaGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAACCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCCGGCTTGCCCGCGAAGAGGCCCTTGAAtccct                                                                                                                                       >  2:240881/1‑150 (MQ=255)                 caGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAAtccctc                                                                                                                                      <  1:1569494/150‑1 (MQ=255)                 caGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAAtccctc                                                                                                                                      <  1:1766635/150‑1 (MQ=255)                   gAACGAAGACCTGTCGCGTTACATTATCTAAGACCGGTTTCGACAGTTTCGCGGACAAGCCCGCTCCTTCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAAtccctccc                                                                                                                                    >  1:2178367/1‑150 (MQ=255)                       gAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCtt                                                                                                                                               >  1:1916573/1‑135 (MQ=255)                       gAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCtt                                                                                                                                               <  2:1916573/135‑1 (MQ=255)                       gAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCAt                                                                                                                                >  1:938804/1‑150 (MQ=255)                       gAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGAGCGGGCTTGCCCGCGAAGACGCCCTTGAATCCCTCCCCAAt                                                                                                                                >  2:151311/1‑150 (MQ=255)                                     ttACATTCTGTAAGACCGGTTTCGACAGTTTCGCTGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtgt                                                                                                                  <  1:575297/150‑1 (MQ=255)                                     ttACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtgt                                                                                                                  >  2:58126/1‑150 (MQ=255)                                        cATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCt                                                                                                               >  1:1940934/1‑150 (MQ=255)                                         aTTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCGCCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTccccc                                                                                                                                  <  1:2036639/130‑1 (MQ=255)                                         aTTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTccccc                                                                                                                                  >  2:2036639/1‑130 (MQ=255)                                          ttCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAAtccctcc                                                                                                                                     <  2:2247792/126‑1 (MQ=255)                                          ttCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAAtccctcc                                                                                                                                     >  1:2247792/1‑126 (MQ=255)                                            cTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCAGTGCGGGGGCGGGCTTGCCCGCGAAAAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtcat                                                                                                           <  1:1574768/150‑1 (MQ=255)                                              gTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtgtg                                                                                                                 <  2:100461/142‑1 (MQ=255)                                              gTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtgtg                                                                                                                 >  1:100461/1‑142 (MQ=255)                                              gTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtcatca                                                                                                         >  2:1290729/1‑150 (MQ=255)                                              gTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtcatca                                                                                                         <  1:829981/150‑1 (MQ=255)                                                 aGACCGGTTTCGCCAGTTTCGCGGGCAAGCCCGCTCCTCCACGCCCCACCACATCCCTTGGGCCTGTGGTGATCCGCGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCt                                                                                                      <  2:773860/150‑1 (MQ=255)                                                     cGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCg                                                                                                  >  1:2139507/1‑150 (MQ=255)                                                     cGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCg                                                                                                  >  2:754437/1‑150 (MQ=255)                                                     cGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCg                                                                                                  >  1:2049285/1‑150 (MQ=255)                                                      ggTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCga                                                                                                 <  1:58126/150‑1 (MQ=255)                                                         ttCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCgagag                                                                                              >  1:1637812/1‑150 (MQ=255)                                                         ttCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCgagag                                                                                              <  1:700747/150‑1 (MQ=255)                                                            gACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCCTCAGCTCCCGAGAGAtt                                                                                           >  2:514020/1‑150 (MQ=255)                                                                 tttCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGcc                                                                                      <  2:1637812/150‑1 (MQ=255)                                                                   TCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCa                                                                                    >  1:1290729‑M1/1‑150 (MQ=255)                                                                       GGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGc                                                                                                       >  2:1322999‑M1/1‑127 (MQ=255)                                                                       GGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGc                                                                                                       <  1:1322999‑M1/127‑1 (MQ=255)                                                                       GGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGc                                                                                >  2:2139507‑M1/1‑150 (MQ=255)                                                                         GCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGccc                                                                              <  2:600589‑M1/150‑1 (MQ=255)                                                                         GCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGccc                                                                              <  1:399073‑M1/150‑1 (MQ=255)                                                                            AGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAgg                                                                                                                                                    <  1:1553766‑M1/77‑1 (MQ=255)                                                                            AGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAgg                                                                                                                                                    >  2:1553766‑M1/1‑77 (MQ=255)                                                                              CCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtca                                                                                                            >  1:1345081‑M1/1‑115 (MQ=255)                                                                              CCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtca                                                                                                            <  2:1345081‑M1/115‑1 (MQ=255)                                                                                 gcccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCgcctgcct                                                                      >  1:1324695‑M2/69‑150 (MQ=255)                                                                                 GCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGCCACCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCgcctgcct                                                                      >  1:754437‑M1/1‑150 (MQ=255)                                                                                       gcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggggcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGcc                                                                >  2:177673‑M2/63‑150 (MQ=255)                                                                                        cACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCa                                                               <  2:1637417/150‑1 (MQ=255)                                                                                          cggatcaccacaggcccaagggttgtggtggcgcgtgcgggggcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATc                                                             >  1:338202‑M2/60‑150 (MQ=255)                                                                                            gatcaccacaggcccaagggttgtggtggcgcgtgcgggggcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCaa                                                           <  2:338202‑M2/93‑1 (MQ=255)                                                                                               caccacAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCt                                                        >  2:246981/1‑150 (MQ=255)                                                                                                 ccacAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGcc                                                                                                                                                  >  1:1974352/1‑58 (MQ=255)                                                                                                 ccacAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGcc                                                                                                                                                  <  2:1974352/58‑1 (MQ=255)                                                                                                  cacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGc                                                                                       >  1:1835638‑M2/52‑116 (MQ=255)                                                                                                  cacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGc                                                                                       <  2:1835638‑M2/65‑1 (MQ=255)                                                                                                       gcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTccc                                                                                                   <  1:2251627‑M2/53‑1 (MQ=255)                                                                                                       gcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTccc                                                                                                   >  2:2251627‑M2/47‑99 (MQ=255)                                                                                                        ccTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGc                                               <  2:1940934/150‑1 (MQ=255)                                                                                                         cTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCga                                                                                                 >  1:355629/1‑99 (MQ=255)                                                                                                         cTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCga                                                                                                 <  2:355629/99‑1 (MQ=255)                                                                                                           tGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTGCCGCCATCAACCTGCACAAAGCCTc                                            <  2:399073/150‑1 (MQ=255)                                                                                                            agggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTcc                                           <  2:1324695‑M2/109‑1 (MQ=255)                                                                                                             ggCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTg                                                                                        <  1:489163/104‑1 (MQ=255)                                                                                                             ggCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTg                                                                                        >  2:489163/1‑104 (MQ=255)                                                                                                              gCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGc                                                                                       <  2:1239972/104‑1 (MQ=255)                                                                                                              gCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGc                                                                                       >  1:1239972/1‑104 (MQ=255)                                                                                                                cTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGTCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGa                                       <  1:476843/150‑1 (MQ=255)                                                                                                                cTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGACCTTGAATCTGCCCCCCATAAGCTGGAAGCGGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGa                                       >  1:1213269/1‑150 (MQ=255)                                                                                                                    ggtgATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtg                                                                                                                   >  1:718173/1‑70 (MQ=255)                                                                                                                    ggtgATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCtg                                                                                                                   <  2:718173/70‑1 (MQ=255)                                                                                                                    ggtgATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCt                                   >  2:784229/1‑150 (MQ=255)                                                                                                                       gATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCa                                                                                    <  1:2212454/98‑1 (MQ=255)                                                                                                                       gATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCa                                                                                    >  2:2212454/1‑98 (MQ=255)                                                                                                                       gATCCGTGCGGGGGCGGGCTTGCCCGAAAAAAGGGCCTTGAATCCCTCCCCAATAAGCTGGAAGCTGTGCTTCATAAGCGCCCGAGAGCTTCTGCCCATGGCCCGCCTGCCTACCGCCAGCCACCTGCACAAAACCTCCAAAGCCCTCAg                                >  2:1380663/1‑150 (MQ=255)                                                                                                                        aTCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCgagaga                                                                                             <  1:1011059/88‑1 (MQ=255)                                                                                                                        aTCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCgagaga                                                                                             >  2:1011059/1‑88 (MQ=255)                                                                                                                           cGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAAc                                                          >  2:1817508/1‑120 (MQ=255)                                                                                                                           cGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAAc                                                          <  1:1817508/120‑1 (MQ=255)                                                                                                                               cGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCt                        <  2:1213269/150‑1 (MQ=255)                                                                                                                                    gcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCa                   >  1:527940‑M2/18‑150 (MQ=255)                                                                                                                                        gcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtcatc                                                                                                          >  2:1204738‑M2/14‑59 (MQ=255)                                                                                                                                        gcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtcatc                                                                                                          <  1:1204738‑M2/46‑1 (MQ=255)                                                                                                                                        gcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCg               >  2:769557‑M2/14‑150 (MQ=255)                                                                                                                                        gcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCACCCTCACCTACGCACCCg               >  1:1427168‑M2/14‑150 (MQ=255)                                                                                                                                         cttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCgg              >  2:472120‑M2/13‑150 (MQ=255)                                                                                                                                          ttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGc             >  2:1847433‑M2/12‑150 (MQ=255)                                                                                                                                             cccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAg          <  1:769557‑M2/142‑1 (MQ=255)                                                                                                                                              ccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAgg         >  2:995793‑M2/8‑150 (MQ=255)                                                                                                                                              ccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAgg         >  1:2008939‑M2/8‑150 (MQ=255)                                                                                                                                               cgcgaaGATGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACATACGCACCCGGCGAGGt        >  1:1735210‑M2/7‑150 (MQ=255)                                                                                                                                                gcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTc       <  1:246981‑M2/145‑1 (MQ=255)                                                                                                                                                   aaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTAc    <  1:240881‑M2/148‑1 (MQ=255)                                                                                                                                                   aaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTAc    >  1:1499118‑M2/3‑150 (MQ=255)                                                                                                                                                     gagGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGc             >  1:438344/1‑139 (MQ=255)                                                                                                                                                     gagGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGc             <  2:438344/139‑1 (MQ=255)                                                                                                                                                     gagGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTacca  >  1:855254/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTACCA  >  NC_002947/5698718‑5699015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.