New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3976787 = | NA (NA) | 20 (0.980) | 14/208 | NT | 100% | intergenic (+177/‑203) | PP_3501/PP_3502 | transposase/transposase |
? | NC_002947 | 4578248 = | 0 (0.000) | intergenic (+63/‑74) | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme |
CTTGCTCGCGAGGCATTCCTTATCGGCGCTTGGGTGTTGAAAGGAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAagcgggtttacccgcgaa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3976919‑3976787 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAGGCATGCCCTTCCC > NC_002947/4578248‑4578392 CTTGCTCGCGAGGCATTCCTTATCGGCGCTTGGGAGTTGAAAGGAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCACCCTTCAAGTCCTACAATACAAGC > 1:654740/1‑136 TGCTCGCGAGGCATTCCTTATCGGCGCTTGGGTGTTGAAAGGAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGG < 1:181101/136‑1 TGCTCGCGAGGCATTCCTTATCGGCGCTTGGGTGTTGAAAGGAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGG > 1:126691/1‑136 TCGCGAGGCATTCCTTATCGGCGCTTGGGTGTTGAAAGGAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTT > 1:644970/1‑136 TCGCGAGGCATTCCTTATCGGCGCTTGGGTGTTGAAAGGAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTT > 1:283047/1‑136 TCGCGAGGCATTCCTTATCGGCGCTTGGGTGTTGAAAGGAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTT > 1:280155/1‑136 CGCGAGGCATTCCTTATCGGCGCTTGGGTGTTGAAAGGAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTT < 2:651188/136‑1 GCGAGGCATTCCTTATCGGCGCTTGGGTGTTGAAAGGAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTA > 1:460715/1‑136 TCCTTATCGGCGCTTGGGTGTTGAAAGGAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAtg < 2:633178/136‑3 CCTTATCGGCGCTTGGGTGTTGAAAGGAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGT < 1:412800/136‑1 GGAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCC < 1:627755/136‑1 GAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCC < 2:536856/136‑1 GGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCA > 1:284567/1‑136 GGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCA > 1:498510/1‑136 ACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGA < 1:295313/136‑1 ACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCA > 1:455562/1‑136 ACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCA > 2:513409/1‑136 ACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCA > 1:388842/1‑136 GAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCC > 2:467300/1‑136 GAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCC > 1:409262/1‑136 GAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCC > 2:162318/1‑136 GAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCC > 1:312688/1‑136 GAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGC > 2:8121/1‑69 GAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTCTACCCGC < 1:8121/69‑1 GTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCA > 1:554079/1‑136 GTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCA < 2:498510/136‑1 ATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAAGCGGGTTTACCAGCGAAGTGGCCAATGCAGGACAGCACAAATCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCACCGCACCCCAAAGAAAACC > 1:544478/1‑136 CCTCCCTTCAAGTCCTACCATACAACCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGC > 1:478129/1‑136 CCTTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCA < 2:478129/136‑1 TTCAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATC > 2:362831/1‑136 CAAGTCCTACCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGC < 1:374019/136‑1 CCATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCG > 1:76600/1‑136 ATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAA < 1:467300/136‑1 ATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAA > 1:409033/1‑136 ATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAA > 2:636018/1‑136 ATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCAC < 2:245968/61‑1 ATACAAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCAC > 1:245968/1‑61 GCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAGGCATG < 2:431016/136‑1 GGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAGGCATGCCC > 2:259020/1‑136 ACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAGGCATGCCCTTCCC > 1:245621/1‑136 CTTGCTCGCGAGGCATTCCTTATCGGCGCTTGGGTGTTGAAAGGAGGAGGGGTGATTTCTCCTACGGTCTGTACTGCGCGAACAGTCAGAAGCGAGTTATGGCCCTCCTCCTCCCTTCAAGTCCTACCATACAagcgggtttacccgcgaa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3976919‑3976787 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAGGCATGCCCTTCCC > NC_002947/4578248‑4578392 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |