New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3976787 = | NA (NA) | 20 (0.980) | 14/208 | NT | 100% | intergenic (+177/‑203) | PP_3501/PP_3502 | transposase/transposase |
? | NC_002947 | 4578248 = | 0 (0.000) | intergenic (+63/‑74) | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme |
AAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCC > NC_002947/3976656‑3976888 | aacgcagcTCGACAGGGTGGGCGAGTCCATACATCGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTAt < 2:316318/133‑1 (MQ=255) agcTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAg < 2:19417/136‑1 (MQ=255) gACAGTGTGGGCGAGTCCATACATAGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACtt < 1:166224/136‑1 (MQ=255) gggCGAGTCCATACATAGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGggag > 1:282058/1‑136 (MQ=255) gggCGAGTCCATACATAGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGggag > 1:3259/1‑136 (MQ=255) gggCGAGTCCATACATAGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGggag > 1:506820/1‑136 (MQ=255) gggCGAGTCCATACATAGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTAGAAGggat > 2:654740/1‑135 (MQ=255) gtcGAGTCCATACATAGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGggagg < 2:310220/134‑1 (MQ=255) ggCTAGTCATTACTTAGGAGGGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGggagg < 1:342519/136‑1 (MQ=21) ggCGAGTCCATACATAGGTGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGggagg < 2:592084/136‑1 (MQ=255) atacataGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGcc > 2:319724/1‑136 (MQ=255) atacataGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGcc > 2:375824/1‑136 (MQ=255) acataGGTCCGGGTCAACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACTTAGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGAGTTGAAGGGAGGAGGAGGGCCAt < 2:580631/136‑1 (MQ=25) aGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGc > 2:30383/1‑136 (MQ=255) gTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTg > 1:223267/1‑136 (MQ=255) ttACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTAt < 1:56331/92‑1 (MQ=255) ttACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTAt > 2:56331/1‑92 (MQ=255) ggcgAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTc < 1:636670/135‑1 (MQ=255) cgcgAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTc < 1:30383/136‑1 (MQ=255) aTACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCa < 2:238370/136‑1 (MQ=255) aCGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGt < 1:460279/136‑1 (MQ=255) aCGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGt < 1:319724/136‑1 (MQ=255) ccGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGCCTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGccc > 2:553546/1‑136 (MQ=255) aTGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAggtta < 2:384123/136‑4 (MQ=255) aTGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGgaga < 1:177230/136‑1 (MQ=255) cGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCAccc < 1:667984/136‑1 (MQ=255) cGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCAccc < 1:283525/136‑1 (MQ=255) aCATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCttt < 2:7746/136‑1 (MQ=255) tagtagGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACAccc < 2:493001/136‑1 (MQ=40) tagtagGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACAccc < 1:351197/136‑1 (MQ=40) | AAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCC > NC_002947/3976656‑3976888 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |