New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5761370 =	16 (0.670)	5 (0.280)	5/180	NT	27.2%	intergenic (+42/‑646)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
	?	NC_002947	5763170 =	15 (0.850)					intergenic (+189/+329)	PP_5050/PP_5051	transposase/hypothetical protein

TACGGTGGCGGCAGCAACGGTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCGCGATGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5761529‑5761370 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcctgtgggagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCA  >  NC_002947/5763170‑5763300                                                                                                                                                                                                                                                                                                     TACGGTGGCGGCAGCAACGGTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTG                                                                                                                                                             >  1:569215/1‑136  ACGGTGGCGGCAGCAACGGTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGG                                                                                                                                                            <  2:358839/136‑1           GCAGCAACGGTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCT                                                                                                                                                   >  1:322722/1‑136                 ACGGTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTC                                                                                                                                             <  1:234369/136‑1                 ACGGTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTC                                                                                                                                             <  1:650625/136‑1                  cgcTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCG                                                                                                                                            <  1:566625/133‑1                    ggGAACGGCTGGTGGAGATTGGCCTGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCGCG                                                                                                                                          <  1:547250/134‑1                    GTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCGCG                                                                                                                                          <  1:633735/136‑1                                     ATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGC                                                                                                                         <  1:473074/136‑1                                                                                        CGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTC                                                                      >  2:561523/1‑136                                                                                         GCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCT                                                                     >  2:374089/1‑136                                                                                         GCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTC                                                                                                                                             <  1:653034/64‑1                                                                                         GCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTC                                                                                                                                             >  2:653034/1‑64                                                                                                     CACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAA                                                         <  2:322722/136‑1                                                                                                                         CAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAA                                     <  1:561523/136‑1                                                                                                                                    CTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAA                          >  2:483376/1‑136                                                                                                                                    CTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCAACCGCAA                          >  1:123498/1‑136                                                                                                                                      GTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAG                        <  2:513197/136‑1                                                                                                                                       TGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGC                       <  1:53027/136‑1                                                                                                                                        GGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCC                      <  2:611797/136‑1                                                                                                                                          GAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCA                    >  2:503867/1‑136                                                                                                                                          GAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAAAGCACCGTTCCAGTGCCCGCTGCACCTCTGGAAGGAAAAAATCCACTAAAAATCCGGCCAAATAACCCGCAAAGCCCA                    >  1:325048/1‑136                                                                                                                                           AGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAG                   >  2:339594/1‑136                                                                                                                                                       gCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTT       <  2:665400/135‑1                                                                                                                                                            ATGGGGCGCAAAGCGGCGCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCA  <  2:541940/136‑1                                                                                                                                                            ATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCA  >  2:309514/1‑136                                                                                                                                                             TGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTG                                                                    >  2:635302/1‑69                                                                                                                                                             TGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTG                                                                    <  1:635302/69‑1                                                                                                                                                                                                                                                                                                     TACGGTGGCGGCAGCAACGGTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACCGCATCAGCCTTGGGGGCAGAGGTGATCCTGTGGGAGCGGCCTTGTGTCGCGATGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5761529‑5761370 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcctgtgggagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCA  >  NC_002947/5763170‑5763300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.