New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5761370 =	16 (0.670)	5 (0.280)	5/180	NT	27.2%	intergenic (+42/‑646)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
	?	NC_002947	5763170 =	15 (0.850)					intergenic (+189/+329)	PP_5050/PP_5051	transposase/hypothetical protein

GGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCA  >  NC_002947/5763035‑5763300                                                                                                                                        |                                                                                                                                   ggAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATgggg                                                                                                                                    >  1:217051/1‑136 (MQ=255) ggAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATgggg                                                                                                                                    >  1:638733/1‑136 (MQ=255)            attggccagcaggcccggcctcttcgcgggtgaacccgctcctacgacgaccgcgatgtgtgtccaccgcatcagccttgggggcagaggtgatcctgtgggagcggccttgtgtcgcgatgggGCGCAAAGCGGc                                                                                                                         <  1:473074‑M2/12‑1 (MQ=255)               gCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGcccc                                                                                                                      <  1:373347/136‑1 (MQ=255)                      gACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCAAtc                                                                                                               <  1:665886/136‑2 (MQ=255)                      gACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCAAtc                                                                                                               <  1:446633/136‑2 (MQ=255)                                tCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCt                                                                                                     <  1:440688/136‑1 (MQ=255)                                      ttGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGc                                                                                               >  2:53027/1‑136 (MQ=255)                                       tGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCa                                                                                              <  1:550276/136‑1 (MQ=255)                                            agagagGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGtt                                                                                         >  2:468416/1‑136 (MQ=255)                                                      aTGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCg                                                                               >  1:55635/1‑136 (MQ=255)                                                         gCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTg                                                                            <  2:55635/136‑1 (MQ=255)                                                         gCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTg                                                                            <  2:622683/136‑1 (MQ=255)                                                               cgcgatgtgtgtccaccgcatcagccttgggggcagaggtgatcctgtgggagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACctc                                                                      >  2:561523‑M2/74‑136 (MQ=255)                                                                tACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACctct                                                                     <  1:107014/136‑1 (MQ=255)                                                                tACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACctct                                                                     <  1:348493/136‑1 (MQ=255)                                                                gcgatgtgtgtccaccgcatcagccttgggggcagaggtgatcctgtgggagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACctct                                                                     >  2:374089‑M2/73‑136 (MQ=255)                                                                            caccgcatcagccttgggggcagaggtgatcctgtgggagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACaaa                                                         <  2:322722‑M2/76‑1 (MQ=255)                                                                                         gAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATc                                            <  2:638733/136‑1 (MQ=255)                                                                                                cagaggtgatcctgtgggagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCaa                                     <  1:561523‑M2/96‑1 (MQ=255)                                                                                                  aCCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAAt                                   >  1:598642/1‑136 (MQ=255)                                                                                                  aCCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAAt                                   >  1:292242/1‑136 (MQ=255)                                                                                                           ctgtgggagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCaa                          >  2:483376‑M2/30‑136 (MQ=255)                                                                                                           ctgtgggagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCAACCGCaa                          >  1:123498‑M2/30‑136 (MQ=255)                                                                                                             gtgggagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAg                        <  2:513197‑M2/109‑1 (MQ=255)                                                                                                              tgggagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGc                       <  1:53027‑M2/110‑1 (MQ=255)                                                                                                               gggagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGcc                      <  2:611797‑M2/111‑1 (MQ=255)                                                                                                                 gagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCa                    >  2:503867‑M2/24‑136 (MQ=255)                                                                                                                 gagcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAAAGCACCGTTCCAGTGCCCGCTGCACCTCTGGAAGGAAAAAATCCACTAAAAATCCGGCCAAATAACCCGCAAAGCCCa                    >  1:325048‑M2/24‑136 (MQ=255)                                                                                                                  agcggccttgtgtcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAg                   >  2:339594‑M2/23‑136 (MQ=255)                                                                                                                              gcgcgatgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCtt       <  2:665400‑M2/126‑1 (MQ=255)                                                                                                                                   atgggGCGCAAAGCGGCGCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCa  <  2:541940‑M2/131‑1 (MQ=255)                                                                                                                                   atgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCa  >  2:309514‑M2/6‑136 (MQ=255)                                                                                                                                    tgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTg                                                                    <  1:635302‑M2/65‑1 (MQ=255)                                                                                                                                    tgggGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTg                                                                    >  2:635302‑M2/5‑69 (MQ=255)                                                                                                                                        |                                                                                                                                   GGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATCCGGCCAAATCACCCGCAAAGCCCAGTATTCACGGCTTTTGCA  >  NC_002947/5763035‑5763300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.