| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 1,515,811 | (33-bp)2→1 | pseudogene (715‑747/1851 nt) | PP_1325 ← | putative lipoprotein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 1515769 | 1515801 | 33 | 20 [0] | [0] 20 | PP_1325 | putative lipoprotein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1515802 = | 0 (0.000) | 13 (1.380) | 10/180 | 0.1 | 100% | pseudogene (756/1851 nt) | PP_1325 | putative lipoprotein |
| ? | NC_002947 | = 1515768 | 0 (0.000) | pseudogene (790/1851 nt) | PP_1325 | putative lipoprotein | |||||
GGACCAGCCTGGCCTTCGCCGTGAAAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1515962‑1515802‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaccaagctcaaggagctggccagccagccgctgaccaagATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTGCGGTACAGGTGTTCGA < NC_002947/1515768‑1515641 GGACCAGCCTGGCCTTCGCCGTGAAAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGA > 2:75833/1‑136 AGCCTGGCCTTCGCCGTGAAAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGG > 1:264633/1‑136 CGTGAAAAGCGCCGGTACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTG > 2:231769/1‑136 CGTGAAAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTG > 1:264715/1‑136 AAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAA > 1:53679/1‑136 AAAGCGCCGACACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAA > 1:83984/1‑136 CAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGG < 1:192027/136‑1 AGCGGCCATCGTAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCTAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCCAGATCGCCCTGCTGCTGCCTCAGGAAGGC < 1:202884/136‑1 CAAACAGCACCCGGACCACCCTGCCGCCCCGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCACGC > 2:9382/1‑136 CAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCCGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGC > 1:61824/1‑136 CAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGC > 1:230765/1‑136 CACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGTTGTAGCCCGCGCCCTGC < 2:228087/136‑1 CCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGC < 2:191703/136‑1 CCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGCTGGCTTCATGGC > 2:265904/1‑136 CGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGGCGCTGACCTAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGGCCTGCGCGATGGCTTCATGGCC < 2:335721/136‑1 AGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCc > 1:117489/1‑135 AGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCA > 2:93632/1‑136 CAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACT < 1:75833/136‑1 CAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACT > 2:72201/1‑136 TCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCC < 2:83984/136‑1 AGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGC < 1:231769/136‑1 AGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCC > 2:181929/1‑136 GCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTGCGG < 2:264362/136‑1 GCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTGCGG < 2:74380/136‑1 GCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTGCGG > 1:150210/1‑136 TGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTGCGGTACAGGTGTTCGA > 2:300756/1‑136 GGACCAGCCTGGCCTTCGCCGTGAAAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1515962‑1515802‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaccaagctcaaggagctggccagccagccgctgaccaagATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTGCGGTACAGGTGTTCGA < NC_002947/1515768‑1515641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |