Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_002947	1,515,811	(33-bp)2→1	pseudogene (715‑747/1851 nt)	PP_1325 ←	putative lipoprotein

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	1515769	1515801	33	20 [0]	[0] 20	PP_1325	putative lipoprotein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1515802 =	0 (0.000)	13 (1.380)	10/180	0.1	100%	pseudogene (756/1851 nt)	PP_1325	putative lipoprotein
	?	NC_002947	= 1515768	0 (0.000)					pseudogene (790/1851 nt)	PP_1325	putative lipoprotein

TCGAACACCTGTACCGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTG  >  NC_002947/1515641‑1515882                                                                                                                                |                                                                                                                   tCGAACACCTGTACCGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtca                                                                                                            >  2:300756‑M2/1‑128 (MQ=255)              ccGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggc                                                                                               >  1:150210‑M2/1‑115 (MQ=255)              ccGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggc                                                                                               <  2:74380‑M2/136‑22 (MQ=255)              ccGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggc                                                                                               <  2:264362‑M2/136‑22 (MQ=255)                   ggCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagct                                                                                          >  2:181929‑M2/1‑110 (MQ=255)                      gctggctgGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctcct                                                                                       <  1:231769‑M2/136‑30 (MQ=255)                         ggctggcCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttga                                                                                    <  2:83984‑M2/136‑33 (MQ=255)                                                  aGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttg                                                           >  2:72201‑M2/1‑79 (MQ=255)                                                  aGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttg                                                           <  1:75833‑M2/136‑58 (MQ=255)                                                    tGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgct                                                         >  2:93632‑M2/1‑77 (MQ=255)                                                    ggggcGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgct                                                         >  1:117489‑M2/2‑77 (MQ=255)                                                         ggcCATGAAGCCATCGCGCAGGCCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATctaggtcagcgcctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcg                                                    <  2:335721‑M2/136‑65 (MQ=255)                                                          gcCATGAAGCCAGCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcgg                                                   >  2:265904‑M2/1‑71 (MQ=255)                                                                        gcgcAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccggg                                     <  2:191703‑M2/136‑80 (MQ=255)                                                                          gcAGGGCGCGGGCTACAACGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtg                                   <  2:228087‑M2/136‑82 (MQ=255)                                                                                 gcgTGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgcggggcggcagggtggtccgggtgctgtttg                            >  2:9382‑M2/1‑48 (MQ=255)                                                                                 gcgGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttg                            >  1:230765‑M2/1‑48 (MQ=255)                                                                                 gcgGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggcgggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttg                            >  1:61824‑M2/1‑48 (MQ=255)                                                                                                      gCCTTCCTGAGGCAGCAGCAGGGCGATctgggtcagcggctggctggccagctccttgagctaggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttgacccaggctacgatggccgct       <  1:202884‑M2/136‑110 (MQ=255)                                                                                                           ccTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttgacccaggcttcgatggccgcttgctg  <  1:192027‑M2/136‑115 (MQ=255)                                                                                                                                |                                                                                                                   TCGAACACCTGTACCGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTG  >  NC_002947/1515641‑1515882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑