Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_002947 1,515,811 (33-bp)2→1 pseudogene (715‑747/1851 nt) PP_1325 ← putative lipoprotein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 1515769 1515801 33 20 [0] [0] 20 PP_1325 putative lipoprotein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1515802 =0 (0.000)13 (1.380) 10/180 0.1 100% pseudogene (756/1851 nt) PP_1325 putative lipoprotein
?NC_002947 = 1515768 0 (0.000)pseudogene (790/1851 nt) PP_1325 putative lipoprotein

TCGAACACCTGTACCGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTG  >  NC_002947/1515641‑1515882
                                                                                                                               |                                                                                                                  
tCGAACACCTGTACCGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtca                                                                                                            >  2:300756‑M2/1‑128 (MQ=255)
             ccGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggc                                                                                               >  1:150210‑M2/1‑115 (MQ=255)
             ccGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggc                                                                                               <  2:74380‑M2/136‑22 (MQ=255)
             ccGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggc                                                                                               <  2:264362‑M2/136‑22 (MQ=255)
                  ggCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagct                                                                                          >  2:181929‑M2/1‑110 (MQ=255)
                     gctggctgGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctcct                                                                                       <  1:231769‑M2/136‑30 (MQ=255)
                        ggctggcCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttga                                                                                    <  2:83984‑M2/136‑33 (MQ=255)
                                                 aGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttg                                                           >  2:72201‑M2/1‑79 (MQ=255)
                                                 aGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttg                                                           <  1:75833‑M2/136‑58 (MQ=255)
                                                   tGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgct                                                         >  2:93632‑M2/1‑77 (MQ=255)
                                                   ggggcGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgct                                                         >  1:117489‑M2/2‑77 (MQ=255)
                                                        ggcCATGAAGCCATCGCGCAGGCCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATctaggtcagcgcctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcg                                                    <  2:335721‑M2/136‑65 (MQ=255)
                                                         gcCATGAAGCCAGCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcgg                                                   >  2:265904‑M2/1‑71 (MQ=255)
                                                                       gcgcAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccggg                                     <  2:191703‑M2/136‑80 (MQ=255)
                                                                         gcAGGGCGCGGGCTACAACGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtg                                   <  2:228087‑M2/136‑82 (MQ=255)
                                                                                gcgTGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgcggggcggcagggtggtccgggtgctgtttg                            >  2:9382‑M2/1‑48 (MQ=255)
                                                                                gcgGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttg                            >  1:230765‑M2/1‑48 (MQ=255)
                                                                                gcgGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggcgggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttg                            >  1:61824‑M2/1‑48 (MQ=255)
                                                                                                     gCCTTCCTGAGGCAGCAGCAGGGCGATctgggtcagcggctggctggccagctccttgagctaggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttgacccaggctacgatggccgct       <  1:202884‑M2/136‑110 (MQ=255)
                                                                                                          ccTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttgacccaggcttcgatggccgcttgctg  <  1:192027‑M2/136‑115 (MQ=255)
                                                                                                                               |                                                                                                                  
TCGAACACCTGTACCGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTG  >  NC_002947/1515641‑1515882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: