| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2649981 = | 19 (1.380) | 3 (0.220) | 3/260 | 0.9 | 12.3% | coding (2325/2499 nt) | PP_2316 | ABC transporter permease |
| ? | NC_002947 | = 4854308 | 24 (1.770) | coding (614/1383 nt) | hemN | oxygen‑independent coproporphyrinogen III dehydrogenase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGCTATTGGCGGCCGTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2650000‑2649981‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcAGCGTGCGCGCAGCCTCGATCAGGGTACGGGTCTGTTCCAGGCTCTGCAGGCGGTTGATCGCGCGCTGCACGGCCGGGTCGAGGTCCTGTACACCCAGGCTGACGCGGTTGAAGCCCAGTTCGCGAAGCAGGC < NC_002947/4854308‑4854176 GGCTATTGGCGGCCGTGGGCAGCGTGCGCGCAGCCTCGATCAGGGTACGGGTCTGTTCCAGGCTCTGCAGGC < 1:278692/72‑1GGCTATTGGCGGCCGTGGGCAGCGTGCGCGCAGCCTCGATCAGGGTACGGGTCTGTTCCAGGCTCTGCAGGC > 2:278692/1‑72 GGCAGCGTGCGCGCAGCCTCGATCAGGGTACGGGTCTGTTCCAGGCTCTGCAGGCGGTTGATCGCGCGCTGCACGGCCGGGTCGAGGTCCTGTACACCCAGGCTGACGCGGTTGAAGCCCAGTTCGCGAAGCAGGC < 2:9094/136‑1 GGCTATTGGCGGCCGTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2650000‑2649981‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcAGCGTGCGCGCAGCCTCGATCAGGGTACGGGTCTGTTCCAGGCTCTGCAGGCGGTTGATCGCGCGCTGCACGGCCGGGTCGAGGTCCTGTACACCCAGGCTGACGCGGTTGAAGCCCAGTTCGCGAAGCAGGC < NC_002947/4854308‑4854176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |