New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 2649981 =19 (1.380)3 (0.220) 3/260 0.9 12.3% coding (2325/2499 nt) PP_2316 ABC transporter permease
?NC_002947 = 4854308 24 (1.770)coding (614/1383 nt) hemN oxygen‑independent coproporphyrinogen III dehydrogenase
Rejected: Frequency below/above cutoff threshold.

GCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAACAGTGCCCCTTGGCGAATGCG  >  NC_002947/2649847‑2650100
                                                                                                                                      |                                                                                                                       
gcccgccGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGc                                                                                                                        <  1:258580/136‑1 (MQ=255)
 gcctgcttcgcgaactgggcttcaaccgcgtcagcctgggtgtacaggacctcgacccggccgtgcagcgcgcgatcaaccgcctgcagagcctggaacagacccgtaccctgatcgaggctgcgcgcacgctGcc                                                                                                                       <  2:9094‑M1/3‑1 (MQ=255)
                                 accaGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCAcccc                                                                                       >  2:187800/1‑135 (MQ=255)
                                              ccGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCt                                                                                                  <  1:258938/112‑1 (MQ=255)
                                              ccGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCt                                                                                                  >  2:258938/1‑112 (MQ=255)
                                                  cAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTTATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGTCCGCACCCAGCAGGCCTAACTCGAtt                                                                      <  1:23617/136‑1 (MQ=255)
                                                  cAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGAtt                                                                      <  1:25338/136‑1 (MQ=255)
                                                        cAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCgg                                                                <  1:116017/136‑1 (MQ=255)
                                                             ccAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCtt                                                           >  2:89430/1‑136 (MQ=255)
                                                                                  gcctgcagagcctggaacagacccgtaccctgatcgaggctgcgcgcacgctGCCCACGGCCGCCAATAGcc                                                                                                      <  1:278692‑M1/20‑1 (MQ=255)
                                                                                  gcctgcagagcctggaacagacccgtaccctgatcgaggctgcgcgcacgctGCCCACGGCCGCCAATAGcc                                                                                                      >  2:278692‑M1/53‑72 (MQ=255)
                                                                                      cTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGccc                                  <  1:107813/136‑1 (MQ=255)
                                                                                           aaTCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTgc                             <  2:241492/136‑1 (MQ=255)
                                                                                                  ggcaatgCGGTACAGCACCCAGGTAACCAGTGCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCCGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAAc                      <  2:288653/130‑1 (MQ=255)
                                                                                                      tAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAACAGTg                  <  1:36790/136‑1 (MQ=255)
                                                                                                               aGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAACAGTGCCCCTTGGc         <  2:264171/136‑1 (MQ=255)
                                                                                                                 cACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAACAGTGCCCCTTGGCGa       <  1:330830/136‑1 (MQ=255)
                                                                                                                   cccAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAACAGTGCCCCTTGGCGAAt     <  2:276293/136‑1 (MQ=255)
                                                                                                                    ccAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAACAGTGCCCCTTGGCGACTg    >  2:360604/1‑136 (MQ=255)
                                                                                                                      aGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAACAGTGCCCCTTGGCGAATgcg  >  1:198336/1‑136 (MQ=255)
                                                                                                                         tAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAAc                      >  1:340242/1‑113 (MQ=255)
                                                                                                                         tAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAAc                      <  2:340242/113‑1 (MQ=255)
                                                                                                                                      |                                                                                                                       
GCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAACAGTGCCCCTTGGCGAATGCG  >  NC_002947/2649847‑2650100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.