New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2649981 =	19 (1.380)	3 (0.220)	3/260	0.9	12.3%	coding (2325/2499 nt)	PP_2316	ABC transporter permease
	?	NC_002947	= 4854308	24 (1.770)					coding (614/1383 nt)	hemN	oxygen‑independent coproporphyrinogen III dehydrogenase
Rejected: Frequency below/above cutoff threshold.

GCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAACAGTGCCCCTTGGCGAATGCG  >  NC_002947/2649847‑2650100                                                                                                                                       |                                                                                                                        gcccgccGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGc                                                                                                                        <  1:258580/136‑1 (MQ=255)  gcctgcttcgcgaactgggcttcaaccgcgtcagcctgggtgtacaggacctcgacccggccgtgcagcgcgcgatcaaccgcctgcagagcctggaacagacccgtaccctgatcgaggctgcgcgcacgctGcc                                                                                                                       <  2:9094‑M1/3‑1 (MQ=255)                                  accaGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCAcccc                                                                                       >  2:187800/1‑135 (MQ=255)                                               ccGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCt                                                                                                  <  1:258938/112‑1 (MQ=255)                                               ccGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCt                                                                                                  >  2:258938/1‑112 (MQ=255)                                                   cAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTTATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGTCCGCACCCAGCAGGCCTAACTCGAtt                                                                      <  1:23617/136‑1 (MQ=255)                                                   cAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGAtt                                                                      <  1:25338/136‑1 (MQ=255)                                                         cAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCgg                                                                <  1:116017/136‑1 (MQ=255)                                                              ccAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCtt                                                           >  2:89430/1‑136 (MQ=255)                                                                                   gcctgcagagcctggaacagacccgtaccctgatcgaggctgcgcgcacgctGCCCACGGCCGCCAATAGcc                                                                                                      <  1:278692‑M1/20‑1 (MQ=255)                                                                                   gcctgcagagcctggaacagacccgtaccctgatcgaggctgcgcgcacgctGCCCACGGCCGCCAATAGcc                                                                                                      >  2:278692‑M1/53‑72 (MQ=255)                                                                                       cTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGccc                                  <  1:107813/136‑1 (MQ=255)                                                                                            aaTCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTgc                             <  2:241492/136‑1 (MQ=255)                                                                                                   ggcaatgCGGTACAGCACCCAGGTAACCAGTGCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCCGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAAc                      <  2:288653/130‑1 (MQ=255)                                                                                                       tAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAACAGTg                  <  1:36790/136‑1 (MQ=255)                                                                                                                aGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAACAGTGCCCCTTGGc         <  2:264171/136‑1 (MQ=255)                                                                                                                  cACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAACAGTGCCCCTTGGCGa       <  1:330830/136‑1 (MQ=255)                                                                                                                    cccAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAACAGTGCCCCTTGGCGAAt     <  2:276293/136‑1 (MQ=255)                                                                                                                     ccAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAACAGTGCCCCTTGGCGACTg    >  2:360604/1‑136 (MQ=255)                                                                                                                       aGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAACAGTGCCCCTTGGCGAATgcg  >  1:198336/1‑136 (MQ=255)                                                                                                                          tAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAAc                      >  1:340242/1‑113 (MQ=255)                                                                                                                          tAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAAc                      <  2:340242/113‑1 (MQ=255)                                                                                                                                       |                                                                                                                        GCCCGCCGTGTTCCCAGCACCCCAGCACCACCCACCAGCAGTGCCCCCGTCAGCGGCAACACCAGCAGCCACGGGTGCGGGCTCCACTGCAAATCGAAGGCATAGCGGTACAGCACCCAGGTAATCAGTTCGCAGCCCACGGCCGCCAATAGCCCGCTGGCCGCACCCAGCAGGCCGAACTCGATTCGCCGGGCCTTGACCAGCAACGGCCGCGCCGCGCCCAGTGCGCGCAACAGTGCCCCTTGGCGAATGCG  >  NC_002947/2649847‑2650100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.