Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	5654316	5654383	68	2 [0]	[1] 2	PP_4959	diguanylate cyclase

GATAGGCAGGTCGCGCAGCATGCGCAACGAACAGTCACCCGCACCGAAGTCATCCAGGGCCACCCTCACGCCCAGCTCACGCAAGCGGTGTATCTGTTTGACGGCCGCGTCGATGTTATACATCAGCGACGTTTCCGCCACTTCCACCTCCAACTGCGTCGGGACAAGCTGGTAAAGCTGGATGACCCGTTGCAGC  >  NC_002947/5654324‑5654519                                                             |                                                                                                                                        gATAGGCAGGTCGCGCAGCATGCGCAACGAACAGTCACCCGCACCGAAGTCATCCAGGGCCACCCTCACGCCCAGCTCACGCAAGCGGTGTATCTGTTTGACGGCCGCGTCGATGTTATACATCAGCGACGTTTcc                                                              >  1:20332/1‑136 (MQ=255)                                                             cACCCTCACGCCCAGCTCACGCAAGCGGTGTATCTGTTTGACGGCCGCGTCGATGTTATACATCAGCGACGTTTCCGCCACTTCCACCTCCAACTGCGTCGGGACAAGCTGGTAAAGCTGGATGCCCCGTTGCatc  >  1:144717/1‑134 (MQ=255)                                                             |                                                                                                                                        GATAGGCAGGTCGCGCAGCATGCGCAACGAACAGTCACCCGCACCGAAGTCATCCAGGGCCACCCTCACGCCCAGCTCACGCAAGCGGTGTATCTGTTTGACGGCCGCGTCGATGTTATACATCAGCGACGTTTCCGCCACTTCCACCTCCAACTGCGTCGGGACAAGCTGGTAAAGCTGGATGACCCGTTGCAGC  >  NC_002947/5654324‑5654519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑