New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1015848	1 (0.040)	17 (0.700)	12/264	0.5	94.4%	intergenic (‑75/‑693)	SBRG_Ecoli_galE/prfC	SBRG_Ecoli_galE/peptide chain release factor 3
	?	NC_002947	= 4543236	NA (NA)					intergenic (+45/‑275)	PP_4025/PP_4027	transposase/hypothetical protein

TTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1015717‑1015848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCG  <  NC_002947/4543236‑4543114                                                                                                                                                                                                                                                                 TTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAGTAA                                                                                                                         <  2:153863/136‑1                                    CACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAG                                                                                      <  2:438080/136‑1                                                           ATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGATTAAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTG                                                               >  2:34662/1‑136                                                           ATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTG                                                               >  2:537777/1‑136                                                                 TCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAAC                                                         >  2:502555/1‑136                                                                   CATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAG                                                       >  1:406505/1‑136                                                                                GTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCc                                          >  1:101118/1‑135                                                                                GTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCA                                          >  1:404019/1‑136                                                                                GTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCA                                          >  1:555854/1‑136                                                                                      AATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTT                                    >  1:606216/1‑136                                                                                              TAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCT                            >  2:151259/1‑136                                                                                              TAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCT                            >  2:455178/1‑136                                                                                                     ACAAAGATGCGAAAAGTGTGACATGGAATAAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCG                     <  2:606216/136‑1                                                                                                                 AAAGTGTGACATGGAATAAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCG         >  2:15476/1‑136                                                                                                                   AGTGTGACATGGAATAAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGC       <  2:406505/136‑1                                                                                                                   AGTGTGACATGGAATAAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGC       <  1:455178/136‑1                                                                                                                        GACATGGAATAAAGTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCG  >  1:549271/1‑136                                                                                                                                                                                                                                                                 TTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1015717‑1015848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAACCGATCCATGAACCCCACCTACCACAAGGTGGAAGCCAAAGTTACCGTGGCATCTCTGGCGAACAGTTCCATGGCAGCAGCGCTTCGTAGTCTGCTACCGATGAGGCGTGCGGCAGTCG  <  NC_002947/4543236‑4543114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.