New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1849440 =	0 (0.000)	13 (0.550)	11/258	0.6	100%	coding (345/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	2942681 =	NA (NA)					intergenic (+46/+37)	PP_2569/PP_2570	MHS family metabolite MFS transporter/transposase

CACAAACCCTGGAGCAGGCCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1849564‑1849440 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTT  >  NC_002947/2942681‑2942815                                                                                                                                                                                                                                                                      CACAAACCCTGGAGCAGGCCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAA                                                                                                                              >  1:492191/1‑136      ACCCTGGAGCAGGCCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGC                                                                                                                         >  1:171562/1‑136             AGCAGGCCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACAGGCACCCAACTCTCATCAAACAAAATGCAACCCAT                                                                                                                  <  1:319325/136‑1                     ttTGTGCGCGCTGTGGCGTTTTTGGCCCGGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTAATTCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCT                                                                                                          <  2:617294/134‑1                     GATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCT                                                                                                          >  1:326221/1‑136                     GATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATCAAACCCATTGTTTTCT                                                                                                          >  1:107032/1‑136                       TGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAA                                                                                                        <  1:630785/136‑1                              GCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCA                                                                                                 >  1:589744/1‑136                                               CCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAAAGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGAT                                                                                >  2:421880/1‑136                                                 CGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATAC                                                                              <  1:595560/136‑1                                                                                    ATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGGGGTTGGAAGCAAACCCCcggc                                           >  1:111271/1‑132                                                                                    ATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCCGGCTTTTCGAAGCAAACCCCGGcc                                           >  2:514724/1‑134                                                                                         CAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCCGGCTTTGGGAAGCAAAGCCCGGCCCGGCC                                      >  1:605047/1‑136                                                                                                                             CTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGCCCAGCCGGTCTTGGGTTCTGGGTTCGAACTCCACAAGACCTT  >  1:441608/1‑136                                                                                                                                                                                                                                                                      CACAAACCCTGGAGCAGGCCGATGTGCGCGCAGTGGCGTTTCTGGCCCCGGACCGCACGCGCCTGGCCCACGCCGGCCCGAGCATGCTCAATCTGCCGCCCAGCGGCGGTACCGGCACCCAACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1849564‑1849440 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTT  >  NC_002947/2942681‑2942815

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.