New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1849440 =	0 (0.000)	13 (0.550)	11/258	0.6	100%	coding (345/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	2942681 =	NA (NA)					intergenic (+46/+37)	PP_2569/PP_2570	MHS family metabolite MFS transporter/transposase

GGTACCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGA  >  NC_002947/2942547‑2942773                                                                                                                                       |                                                                                             ggTACCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCtctc                                                                                             >  1:209081/1‑136 (MQ=255) ggTACCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCtctc                                                                                             >  1:478912/1‑136 (MQ=255)         aTCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATcaaaca                                                                                     >  1:570363/1‑136 (MQ=255)             tGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAAt                                                                                 <  2:443271/136‑1 (MQ=255)                           aCAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGttt                                                                   >  1:313090/1‑136 (MQ=255)                           aCAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGttt                                                                   <  1:67169/136‑1 (MQ=255)                                     tGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGGACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTaaatgtg                                                         >  1:271212/1‑131 (MQ=255)                                     tGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACt                                                         >  2:336505/1‑136 (MQ=255)                                            cttcttCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCAACAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAACCgg                                                  >  2:117211/1‑136 (MQ=255)                                                     gcctgAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGtt                                         <  1:402231/136‑1 (MQ=255)                                                          agaCCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATAc                                    <  1:403549/136‑1 (MQ=255)                                                                      gggATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCgg                        <  2:570363/136‑1 (MQ=255)                                                                                     ccTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCGTTTCGAAGCaaa         >  2:341479/1‑136 (MQ=255)                                                                                            gTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCGTTGCGAAGCAAAGccccgg  >  1:501031/1‑133 (MQ=255)                                                                                                             cGGCCTCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAAccc                                                                          >  1:107981/1‑47 (MQ=255)                                                                                                             cGGCCTCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAAccc                                                                          <  2:107981/47‑1 (MQ=255)                                                                                                                                       |                                                                                             GGTACCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGA  >  NC_002947/2942547‑2942773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.