New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2109155 =	14 (0.580)	3 (0.130)	3/252	1.8	16.5%	coding (721/1515 nt)	PP_1879	hypothetical protein
	?	NC_002947	5613493 =	17 (0.740)					coding (1105/1272 nt)	waaA	3‑deoxy‑D‑manno‑octulosonic acid transferase
Rejected: Frequency below/above cutoff threshold.

GAGAACGGCGCCGGGCAGGAAATGGTCGACATGATGACACTGACCCAGGAGCACATCGAAACACTGGGCCCGCTAGGCACCAGCAAACCGCTCGAGCTGACCTTCCCGGGCGCTTTCATTCGCCAGTCCGGCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2109290‑2109155 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacgCCCCCGCCTCGCGCAGCATCGCGCTGATTT  >  NC_002947/5613493‑5613522                                                                                                                                                                        GAGAACGGCGCCGGGCAGGAAATGGTCGACATGATGACACTGACCCAGGAGCACATCGAAACACTGGGCCCGCTAGGCACCAGCAAACCGCTCGAGCTGACCTTCCCGGGCGCTTTCATTCGCCAGTCCGGCAACG                                <  1:120627/136‑1  AGAACGGCGCCGGGCAGGAAATGGTCGACATGATGACACTCACCCAGGAGCACATCGAAACACTGGGCCCGCTAGGCACCAGCAAACCGCTCGAGCTGACCTTCCCGGGCGCTTTCATTCGCCATTCCGGCAACGC                               >  2:524218/1‑136                                                         CGAAACACTGGGCCCGCTAGGCACCAGCAAACCGCTCGAGCTGACCTTCCCGGGCGCTTTCATTCGCCAGTCCGGCAACGCCCCCGCCTCGCGCAGCATCGCGCTGATTT  <  1:301046/110‑1                                                         CGAAACACTGGGCCCGCTAGGCACCAGCAAACCGCTCGAGCTGACCTTCCCGGGCGCTTTCATTCGCCAGTCCGGCAACGCCCCCGCCTCGCGCAGCATCGCGCTGATTT  >  2:301046/1‑110                                                                                                                                                                        GAGAACGGCGCCGGGCAGGAAATGGTCGACATGATGACACTGACCCAGGAGCACATCGAAACACTGGGCCCGCTAGGCACCAGCAAACCGCTCGAGCTGACCTTCCCGGGCGCTTTCATTCGCCAGTCCGGCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2109290‑2109155 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacgCCCCCGCCTCGCGCAGCATCGCGCTGATTT  >  NC_002947/5613493‑5613522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.