New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2109155 =	14 (0.580)	3 (0.130)	3/252	1.8	16.5%	coding (721/1515 nt)	PP_1879	hypothetical protein
	?	NC_002947	5613493 =	17 (0.740)					coding (1105/1272 nt)	waaA	3‑deoxy‑D‑manno‑octulosonic acid transferase
Rejected: Frequency below/above cutoff threshold.

GGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCTGGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGTCAGTGTCATCATGTCGACCATTTCCTGCCCGGCGCCGTTCTC  >  NC_002947/2109040‑2109290                                                                                                                    |                                                                                                                                        ggCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCTGGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGa                                                                                                                     >  2:470609/1‑136 (MQ=255)               gcgGGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCTGGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAg                                                                                                       <  1:252593/136‑1 (MQ=255)                                         ccACCGCGACCGCTTGCGCACGCTGGGGCGGTGGGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGcc                                                                             <  2:147314/136‑1 (MQ=255)                                         ccAACGCGACCGCTAGCGCACGCGGGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGcc                                                                             <  2:464503/136‑1 (MQ=255)                                               cgACCGCTAGCGCACGCTGGGGCTGTGTGCCAGCGCGGTCCGGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATTAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCgg                                                                       <  2:50568/136‑1 (MQ=255)                                                                 ggggCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGc                                                                     <  2:478270/120‑1 (MQ=255)                                                                 ggggCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGc                                                                     >  1:478270/1‑120 (MQ=255)                                                                 ggggCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGAtgtg                                                     >  1:215632/1‑136 (MQ=255)                                                                  gggCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGc                                                    >  1:593969/1‑136 (MQ=255)                                                                      tgtgtgCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCt                                                >  1:612688/1‑136 (MQ=255)                                                                           gCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGTc                                           >  2:447963/1‑136 (MQ=255)                                                                           gCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGTc                                           >  1:433849/1‑136 (MQ=255)                                                                                    gTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGTCAGTGtcatc                                  >  1:98890/1‑136 (MQ=255)                                                                                      aaatcagcgcgatgctgcgcgaggcgggggCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCg                                                          >  2:301046‑M1/31‑110 (MQ=255)                                                                                      aaatcagcgcgatgctgcgcgaggcgggggCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCg                                                          <  1:301046‑M1/80‑1 (MQ=255)                                                                                                                   gCGTTGCCGGAATGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGTGAGTGTCATCATGTCGACCATTTCCTGCCCGGCGCCGTtct   >  2:524218‑M1/2‑136 (MQ=255)                                                                                                                   ccGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGTCAGTGTCATCATGTCGACCATTTCCTGCCCGGCGCCGTtct   <  2:220651/136‑1 (MQ=255)                                                                                                                    CGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGTCAGTGTCATCATGTCGACCATTTCCTGCCCGGCGCCGTtctc  <  1:120627‑M1/136‑1 (MQ=255)                                                                                                                    |                                                                                                                                        GGCGGTGGCAATTCGCGTGGTGCCAGGGAAAGGTCGGACTCCAACGCGACCGCTAGCGCACGCTGGGGCTGTGTGCCAGCGCGGTCCTGCACTTCATAACGCACGTAACGCGTGCCGTTGCCGGACTGGCGAATGAAAGCGCCCGGGAAGGTCAGCTCGAGCGGTTTGCTGGTGCCTAGCGGGCCCAGTGTTTCGATGTGCTCCTGGGTCAGTGTCATCATGTCGACCATTTCCTGCCCGGCGCCGTTCTC  >  NC_002947/2109040‑2109290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.