New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3976787 = | NA (NA) | 15 (0.720) | 12/228 | 0.4 | 100% | intergenic (+177/‑203) | PP_3501/PP_3502 | transposase/transposase |
? | NC_002947 | 4578248 = | 0 (0.000) | intergenic (+63/‑74) | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme |
CAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATA > NC_002947/3976660‑3976899 | cagcTACACTGGGTGGCCGAGTCCATACATTGGAGCGGGTAAACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGTGTAAACCCGCTTGTATGGTa < 2:571256/136‑1 (MQ=255) tgcTAGACAGTGTGGGCGAGTCCATACTTAGGAGCGGGATTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAg < 2:637394/135‑1 (MQ=255) cggttgACTGTGTGGGCGAGTCCAAATATTGGAGGGGTTTTCCCGGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTTTATGGTAg < 1:66400/131‑1 (MQ=21) cTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGa > 1:227016/1‑136 (MQ=255) ccATACATAGGAGCGGGTTTACCGGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAggg < 2:588889/136‑1 (MQ=255) ccATACATAGGAGCGGGTTAACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAggg < 2:487280/136‑1 (MQ=255) atacataGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGcc > 1:630489/1‑136 (MQ=255) atacataGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGcc > 2:148871/1‑136 (MQ=255) atacataGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGcc > 1:451226/1‑136 (MQ=255) atacataGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGcc > 1:242500/1‑136 (MQ=255) agataGGTGCGGGTTTACCCGGGAATACGGTAGGCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCAt < 2:618252/134‑1 (MQ=255) acataGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCAt < 1:206836/136‑1 (MQ=255) gCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCt > 1:135226/1‑136 (MQ=255) gggTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTc > 1:111516/1‑136 (MQ=255) gTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTg > 1:386741/1‑136 (MQ=255) gTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTg > 1:154644/1‑136 (MQ=255) ttACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGAc < 2:630489/136‑1 (MQ=255) ttACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGAc < 1:148871/136‑1 (MQ=255) cgcgAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTc < 2:227016/136‑1 (MQ=255) cgcgAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTc < 1:539913/136‑1 (MQ=255) aCGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGt < 1:422467/136‑1 (MQ=255) gcgACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGt < 2:111516/136‑1 (MQ=255) gTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCcctcctc > 2:48145/1‑136 (MQ=255) gCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAgcgc > 1:406869/1‑136 (MQ=35) cccGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGcc < 2:386741/136‑1 (MQ=34) gCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATa > 1:138505/1‑136 (MQ=32) | CAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGTTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCCAAGCGCCGATA > NC_002947/3976660‑3976899 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |