| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3976787 = | NA (NA) | 15 (0.720) | 12/228 | 0.4 | 100% | intergenic (+177/‑203) | PP_3501/PP_3502 | transposase/transposase |
| ? | NC_002947 | 4578248 = | 0 (0.000) | intergenic (+63/‑74) | PP_4054/glgX | hypothetical protein/glycogen debranching enzyme | |||||
CTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAGGCAT > NC_002947/4578115‑4578383 | cttgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGc > 2:598494‑M2/134‑136 (MQ=255) tgccctgccGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGat < 2:338793‑M1/136‑3 (MQ=255) tgccctgccGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGat < 2:475926‑M1/136‑3 (MQ=255) tgctcgcgaggcattccttatcggtgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcataccatacaAGCgg > 1:610765‑M2/132‑136 (MQ=255) tgctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCgg > 1:158027‑M2/132‑136 (MQ=255) ccctgccGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattc > 2:571880‑M1/1‑132 (MQ=255) ccctgccGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCCGGTAAACCCGCTCCTACAGGTTCAACACAGGCCCATGTAGGAGattc > 1:443907‑M1/1‑132 (MQ=255) ctcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGt < 2:640760‑M2/7‑1 (MQ=255) tcgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGtt < 1:227792‑M2/8‑1 (MQ=255) cgcgaggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGttt < 2:426167‑M2/9‑1 (MQ=255) aggcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTAccc > 1:48145‑M2/124‑136 (MQ=255) gcattccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCcgc < 1:460220‑M2/15‑1 (MQ=255) tAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggc > 2:151976‑M1/1‑119 (MQ=255) tAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggc > 2:619266‑M1/1‑119 (MQ=255) ccttatcggcgcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGt < 1:520107‑M2/20‑1 (MQ=255) ccACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaatt < 1:243144‑M1/136‑23 (MQ=255) gcttgggtgttgaaaggaggaggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCa < 1:100986‑M2/30‑1 (MQ=255) cGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagt > 1:265597‑M1/1‑108 (MQ=255) ccccGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccat < 2:552315‑M1/136‑40 (MQ=255) cGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcgg < 2:574543‑M1/136‑43 (MQ=255) cGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctc > 1:530134‑M1/1‑90 (MQ=255) gTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctc < 2:555056‑M1/136‑49 (MQ=255) aggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTa > 2:350991‑M2/87‑96 (MQ=255) aggggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTa < 1:350991‑M2/10‑1 (MQ=255) gggtgatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCa > 2:129382‑M2/85‑136 (MQ=255) gatttctcctacggtctgtactgcgcgaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCAc < 1:129382‑M2/56‑1 (MQ=255) aGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaa < 1:399757‑M1/136‑56 (MQ=255) tacggtctgtactgcgcgaacagtcagaagcgagttatggccctccgcctcccttcaagtcctaccatacaAGCGGGTTTAACCGCGACGGGGCCACTGCAGGACAGCACAATTCCCCGTCCCTCACGGCCACTCg > 2:599896‑M2/72‑136 (MQ=255) gCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtca > 2:100614‑M1/1‑64 (MQ=255) tGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcg < 2:99833‑M1/136‑76 (MQ=255) tGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcg < 1:571880‑M1/136‑76 (MQ=255) gggCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgcca > 1:69318‑M1/1‑56 (MQ=255) gggCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaa > 1:156001‑M1/1‑56 (MQ=255) gggCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaa < 2:156001‑M1/111‑56 (MQ=255) gaacagtcagaagcgagttatggctctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGccc > 2:42053‑M2/55‑136 (MQ=255) gaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGccc > 1:396991‑M2/55‑136 (MQ=255) gaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGccc > 1:273050‑M2/55‑136 (MQ=255) gaacagtcagaagcgagttatggccctcctcctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGccc > 2:242974‑M2/55‑136 (MQ=255) cgcgGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttc > 2:351339‑M1/1‑47 (MQ=255) gcgGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttct < 1:628710‑M1/136‑91 (MQ=255) gcgGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttct < 1:100614‑M1/136‑91 (MQ=255) aagcgagttatggccatcctcctcccttcaagtcctaccatacaAGCTGGTTTACCCGCGAAGTGGCCAATGCAGGACACCACAATACCACTACCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCa > 2:242413‑M2/45‑136 (MQ=255) gggTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctcc < 2:112612‑M1/136‑93 (MQ=255) ccGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttgagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgagccagagaatatctccccagcatt > 2:72844‑M1/1‑36 (MQ=255) ccGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcatt > 2:121313‑M1/1‑36 (MQ=255) tACAGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatact > 1:576662‑M1/1‑29 (MQ=255) cctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCCTCATGAGCCCCCGCACCCCAAAGAAAACCCCCTCGgtccc > 1:60195‑M2/25‑134 (MQ=255) aGGTTCATCACAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcc < 1:631575‑M1/136‑111 (MQ=255) ctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAAcc < 1:491872‑M2/101‑1 (MQ=255) ctcccttcaagtcctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAAcc > 2:491872‑M2/24‑124 (MQ=255) tcaCAGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagt > 2:380023‑M1/1‑19 (MQ=255) cacaGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtt < 1:619266‑M1/136‑119 (MQ=255) cacaGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtt < 1:151976‑M1/136‑119 (MQ=255) acaGGCGCATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagttt > 2:304645‑M1/1‑17 (MQ=255) ctaccatacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCACCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGcgcaata > 2:518104‑M2/11‑133 (MQ=255) cgcATGTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcg > 1:529967‑M1/1‑12 (MQ=255) gTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagtgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctg > 2:295567‑M1/1‑7 (MQ=255) gTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctg > 1:421700‑M1/1‑7 (MQ=255) gTAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctg > 2:303371‑M1/1‑7 (MQ=255) tacaAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAg < 2:396991‑M2/132‑1 (MQ=255) tAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcggg < 1:298995‑M1/132‑127 (MQ=255) tAGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcggg > 2:298995‑M1/1‑6 (MQ=255) aGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctgcg < 1:624921‑M1/136‑132 (MQ=255) aGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctgcg < 2:603669‑M1/136‑132 (MQ=255) aGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctgcg > 1:403487‑M1/1‑5 (MQ=255) aGGAGattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctgcg < 2:380459‑M1/136‑132 (MQ=255) gagattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctgcgtt < 1:266390‑M1/136‑134 (MQ=255) agattctatggccggaggcaaattttcagtaaaaacgccatcggcctctctcagcaacctcgaggtacgagtcagcgtgccagagaatttctccccagcattggatactgcccgtcagtttgggcgggctgcgttg > 2:305524‑M1/1‑2 (MQ=255) AGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAGGCAt > 2:607029‑M2/1‑136 (MQ=255) | CTGCCCTGCCGGGGGTTAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGCGGGTTTACCCGCGAAGTGGCCAATGCAGGACAGCACAATTCCCCTTCCATCACGGCCACTCGAGGATCGTCATGAGCCCCCGCACCCCAAAGAAAACCCGCTCGGTCGCACCATCGCGCATTCGCGAAGGCAT > NC_002947/4578115‑4578383 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |