| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1015848 | 2 (0.180) | 8 (0.730) | 6/264 | 0.4 | 80.0% | intergenic (‑75/‑693) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 |
| ? | NC_002947 | = 4543236 | NA (NA) | intergenic (+45/‑275) | PP_4025/PP_4027 | transposase/hypothetical protein | |||||
AGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGT > NC_002947/1015725‑1015983 | ctttttcgactttgctgtcggggcgcatcatggcgggctggctccagaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAATAAATTAGTGGAATCg < 2:177158‑M1/20‑1 (MQ=255) tttttcgactttgctgtcggggcgcatcatggcgggctggctccagaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAATAAATTAGTGGAATCGt < 1:39089‑M1/21‑1 (MQ=255) tATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTAGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAgtaaccgatccatga > 2:224657‑M1/1‑121 (MQ=255) cGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAgtaaccgatccatgaaccccacctaccacaagg < 1:268786‑M1/136‑34 (MQ=255) atcatggcgggctggctccagaaagaaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGtttttt > 1:210361‑M1/91‑136 (MQ=255) tAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctc > 2:214011‑M1/1‑76 (MQ=255) aTTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctctg > 2:287451‑M1/1‑74 (MQ=255) aaatcgggagcacagcatcgggaatcaggtggacggttggaatgtggggatgatggatcccttacGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAAc > 1:177158‑M1/66‑136 (MQ=255) ccATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctctggcgaacagttccatggcagcagcgcttcgtag > 2:182345‑M1/1‑42 (MQ=255) tAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctctggcgaacagttccatggcagcagcgcttcgtagtct > 2:177892‑M1/1‑39 (MQ=255) tAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAAgtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctctggcgaacagttccatggcagcagcgcttcgtagtct > 2:8944‑M1/1‑39 (MQ=255) atgatggatcccttacGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGttt < 1:210194‑M1/120‑1 (MQ=255) tAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAAc < 2:10567/136‑1 (MQ=255) tAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGAGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTAGCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGACGAAc > 2:46409/1‑136 (MQ=255) agtaaccgatccatgaaccccacctaccacaaggtggaagccaaagttaccgtggcatctctggcgaacagttccatggcagcagcgcttcgtagtctgctaccgatgaggcgtgcggcagtcgctccaggacgtg < 1:287451‑M1/136‑136 (MQ=255) | AGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGGAATCGTTTACACAAGAATTTAGCCGTTTTTTATGCGCGATTAAGTGATTATAAAACAGAGGGTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGT > NC_002947/1015725‑1015983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |