New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4588466	233 (0.620)	18 (0.050)	16/276	NT	8.3%	intergenic (‑46/+125)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase
	?	NC_002947	= 4588569	163 (0.430)					intergenic (‑149/+22)	treSB/glgE	bifunctional trehalose synthase B/maltokinase/alpha‑1,4‑glucan:maltose‑1‑phosphate maltosyltransferase

CGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4588334‑4588466 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAG  <  NC_002947/4588569‑4588458                                                                                                                                                                                                                                                            CGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGACCCCCCGTAGGAGCGGG                                                                                                      <  2:1328129/150‑1                                         CACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTC                                                         >  1:3579885/1‑150                                          ACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCG                                                        <  2:8575040/150‑1                                             GCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCA                                                     <  2:3579885/150‑1                                                           AAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCT                                       <  2:2164559/150‑1                                                               CTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGC                                   <  1:3908102/150‑1                                                                     GGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAA                             <  2:3034005/150‑1                                                                      GCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGACCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAA                            <  1:679553/150‑1                                                                       CGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGACCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAAC                           <  1:2510826/150‑1                                                                       CGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGACCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAAC                           <  1:3437451/150‑1                                                                         GGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCC                         <  2:953489/150‑1                                                                         GGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGACCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCC                         <  1:3589734/150‑1                                                                          GAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCG                        <  2:7254514/150‑1                                                                            ACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGACCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCT                      <  2:546841/150‑1                                                                                    CCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCAT                                         >  2:2211982/1‑128                                                                                    CCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTACCCGCGAAGATGACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCAT                                         <  1:2211982/128‑1                                                                                           CGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTGTACCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCACTCCTACGGGGGATCGA       <  2:6746036/150‑1                                                                                                CCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGATCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGACGCCGGTGCCAGGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAG  <  1:2727921/150‑1                                                                                                                                                                                                                                                            CGACTTGATGTGCAGCTGGTAGATGACGGCGTCCTTGTACCACAGCGGGTCGTCGATGAAGGCTGCCGGGCGGGAACGCTTGGCCATGTGCGACTCCTTTCAATTGCATGCACAGACATCCGAGCTTGCTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4588334‑4588466 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCGTAGGAGCGGGTTTATCCGCGA‑‑‑‑‑ACACCGGCGAAGCCGGTGCCATGCACCTCGGCACCGCGGTGTCATCTTCGCGGGTAAACCCGCTCCTACGGGGGATCGAGCAAG  <  NC_002947/4588569‑4588458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.