| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5804892 = | 351 (0.930) | 9 (0.030) | 6/262 | NT | 2.7% | coding (1089/1098 nt) | aroB | 3‑dehydroquinate synthase |
| ? | NC_002947 | 5804929 = | 305 (0.860) | coding (1052/1098 nt) | aroB | 3‑dehydroquinate synthase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTTCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5805046‑5804892‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggccTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGCACCAC > NC_002947/5804929‑5805077 ATTTCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCG > 1:3378339/1‑150 TTTCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGT > 1:4154766/1‑150 TTTCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGT > 1:3857126/1‑150 TTTCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGT > 1:3826145/1‑150 TTCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTG < 2:8580748/150‑1 TTCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTG < 1:3228920/150‑1 TTCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTG < 2:5125334/150‑1 TTCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTG > 2:6647765/1‑150 TTCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTGTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTAACGCGCGATCGTG > 2:3016481/1‑150 TCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTCTTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGG < 1:3264932/150‑1 TCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACGGCGCGATCGTGG > 2:5486399/1‑150 TCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACGGCGCGATCGTGG > 2:5486675/1‑150 TCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGG < 2:6909039/150‑1 TCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGG > 1:1015136/1‑150 TCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGG < 1:7714722/150‑1 TCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGGGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGG > 1:372692/1‑150 CATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGC < 1:4297913/150‑1 CATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGC > 1:7900028/1‑150 CATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGAAGGGCGAGGCCGTGGTGACCGACGACAATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGC > 1:80477/1‑150 ATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCC > 1:2398146/1‑150 ATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCC < 1:4134736/150‑1 AGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCCCGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCA > 1:4899569/1‑150 ATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATG > 1:7848233/1‑150 ATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATG > 2:2517088/1‑150 TTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGT > 1:5214792/1‑150 TTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGT > 1:5214208/1‑150 TCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCT > 1:1445911/1‑150 GGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCAT > 1:1414628/1‑150 GCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATG > 2:1423306/1‑150 GCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATG > 1:2959494/1‑150 CGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGG < 1:3241511/150‑1 CGTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGG < 2:5111953/150‑1 GTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGC < 2:2289996/150‑1 GTGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGC > 1:4505739/1‑150 TGGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGCA < 2:1952066/150‑1 GGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGCAC > 1:2610131/1‑150 GGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGCAC < 1:1936225/150‑1 GGCCTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGCAC < 1:5827347/150‑1 CTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGCACCAC < 1:446174/150‑1 CTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGCACCAC > 1:2040973/1‑150 CTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGCACCAC > 2:8494176/1‑150 ATTTCATGGAGCACATGGCGGTCGACAAGAAGGTGCTCGACGGTCGTTTGCGTCTGGTGCTGCTGCGCCAGATGGGCGAGGCCGTGGTGACCGACGACTATTCGAAAGAGATTCTCCAGGCCACGCTGTCGGCGGATTACCGCGCGATCGTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5805046‑5804892‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggccTGGAGAATCTCTTTCGAATAGTCGTCGGTCACCACGGCCTCGCCCATCTGGCGCAGCAGCACCAGACGCAAACGACCGTCGAGCACCTTCTTGTCGACCGCCATGTGCTCCATGAAATGCGCCGGGGTCATTTCCTGTGGTGGCACCAC > NC_002947/5804929‑5805077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |