New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1015848 =	0 (0.000)	11 (0.630)	11/242	NT	73.3%	intergenic (‑75/‑693)	SBRG_Ecoli_galE/prfC	SBRG_Ecoli_galE/peptide chain release factor 3
	?	NC_002947	5066251 =	8 (0.450)					intergenic (‑421/‑70)	PP_4458/PP_4459	opine ABC transporter substrate‑binding protein/transposase

GAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1015961‑1015848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGA  >  NC_002947/5066251‑5066377                                                                                                                                                                                                                                                   GAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATGTTCTGTCTCAAAAATAAGTAT                                                                                                           >  1:324118/1‑136            TTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATGTTCAGTCTTAAAAATAAGTATTCCATTTGAGC                                                                                                >  2:396199/1‑136             TTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATGTTCTGTCTCAAATATATGTATTCCATTTGAGCT                                                                                               <  1:38888/136‑1                            GCGCAATCATTCATAAACCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCA                                                                                <  1:481058/136‑1                                  TCATTCATAAACCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGG                                                                          <  2:324118/136‑1                                    ATTCATAAACCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGTTTCCACTAATGTTCTGACTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGAC                                                                        <  2:364892/136‑1                                               CTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAG                                                             >  1:165731/1‑136                                                   GTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGAT                                                         >  1:446914/1‑136                                                                          ATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCA                                  >  1:362228/1‑136                                                                           TAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAG                                 <  2:165731/136‑1                                                                                                          TCCACTAATGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGA  <  1:492240/136‑1                                                                                                                                                                                                                                                   GAAACCGCGTCTTTTTTCAGATAAAAAGCGCAATCATTCATAAACCCTCTGTTTTATAATCACTTAATCGCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1015961‑1015848 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGA  >  NC_002947/5066251‑5066377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.