New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1015848 =	0 (0.000)	11 (0.630)	11/242	NT	73.3%	intergenic (‑75/‑693)	SBRG_Ecoli_galE/prfC	SBRG_Ecoli_galE/peptide chain release factor 3
	?	NC_002947	5066251 =	8 (0.450)					intergenic (‑421/‑70)	PP_4458/PP_4459	opine ABC transporter substrate‑binding protein/transposase

CCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGTTCGG  >  NC_002947/5066128‑5066383                                                                                                                            |                                                                                                                                     cccGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCaaa                                                                                                                          <  1:171318/136‑1 (MQ=255) cccGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCaaa                                                                                                                          <  1:231807/136‑1 (MQ=255)          gaaaccgcgtcttttttcagataaaaagcgcaatcattcataaaccctctgttttataatcacttaatcgcgcataaaaaacggctaaattcttgtgtaaacgattccactaatGTTCTGTCTCAAAAATAAGTAt                                                                                                                 >  1:324118‑M2/115‑136 (MQ=255)                     ttttttcagataaaaagcgcaatcattcataaaccctctgttttataatcacttaatcgcgcataaaaaacggctaaattcttgtgtaaacgattccactaatGTTCAGTCTTAAAAATAAGTATTCCATTTGAGc                                                                                                      >  2:396199‑M2/104‑136 (MQ=255)                      tttttcagataaaaagcgcaatcattcataaaccctctgttttataatcacttaatcgcgcataaaaaacggctaaattcttgtgtaaacgattccactaatGTTCTGTCTCAAATATATGTATTCCATTTGAGCt                                                                                                     <  1:38888‑M2/34‑1 (MQ=255)                                     gcgcaatcattcataaaccctctgttttataatcacttaatcgcgcataaaaaacggctaaattcttgtgtaaacgattccactaatGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCa                                                                                      <  1:481058‑M2/49‑1 (MQ=255)                                           tcattcataaaccctctgttttataatcacttaatcgcgcataaaaaacggctaaattcttgtgtaaacgattccactaatGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAgg                                                                                <  2:324118‑M2/55‑1 (MQ=255)                                             attcataaaccctctgttttataatcacttaatcgcgcataaaaaacggctaaattcttgtgtaaacgtttccactaatGTTCTGACTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGAc                                                                              <  2:364892‑M2/57‑1 (MQ=255)                                               gAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGAcgc                                                                            >  1:107382/1‑136 (MQ=255)                                               gAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTACATTTGAGCTACGCTTCCTTGGTCAAACAGGAcgc                                                                            >  1:463738/1‑136 (MQ=255)                                                        ctctgttttataatcacttaatcgcgcataaaaaacggctaaattcttgtgtaaacgattccactaatGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAg                                                                   >  1:165731‑M2/69‑136 (MQ=255)                                                            gttttataatcacttaatcgcgcataaaaaacggctaaattcttgtgtaaacgattccactaatGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGAt                                                               >  1:446914‑M2/65‑136 (MQ=255)                                                                                   ataaaaaacggctaaattcttgtgtaaacgattccactaatGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCa                                        >  1:362228‑M2/42‑136 (MQ=255)                                                                                    taaaaaacggctaaattcttgtgtaaacgattccactaatGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAg                                       <  2:165731‑M2/96‑1 (MQ=255)                                                                                    ggTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGc                                                                  <  1:441003/109‑1 (MQ=255)                                                                                    ggTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGc                                                                  >  2:441003/1‑109 (MQ=255)                                                                                               cacaTTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAAc                            >  2:410509/1‑136 (MQ=255)                                                                                                         ccGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCt                  >  1:227247/1‑136 (MQ=255)                                                                                                                   tccactaatGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACcgacga        <  1:492240‑M2/127‑1 (MQ=255)                                                                                                                         aGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGTTCgg  >  1:387366/1‑136 (MQ=255)                                                                                                                            |                                                                                                                                     CCCGCTACCTTCAGTAACATTTCGTGCGTACACTAAGAGCGAGCGTGAATACGGATGAGACGCAGTCGTGTCAATAGCTGGTAGGTCTCCATCTCACATTGAGGCCGCACTGACTCTGCTAGTGTTCTGTCTCAAAAATAAGTATTCCATTTGAGCTACGCTTCCTTGGTCAAACAGGACGCGGGGTGGAGCGATGAATTCTCAAGACATCGTGCTCAGTGACGATGAACAAGTTGAGCTGAACCGACGAGTTCGG  >  NC_002947/5066128‑5066383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.