New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4813173	0 (0.000)	16 (1.080)	6/204	NT	51.6%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5993954	30 (2.030)					intergenic (+243/‑303)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

ACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGTCTAATTCTCA  >  NC_002947/5993828‑5994089                                                                                                                               |                                                                                                                                        aCGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACTAACAAGGGGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcgg                                                                                                                                <  1:363863‑M2/136‑10 (MQ=255) aCGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACTAACAAGGGGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcgg                                                                                                                                <  1:361416‑M2/136‑10 (MQ=255) aCGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcgg                                                                                                                                <  2:179063‑M2/136‑10 (MQ=255) aCGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcgg                                                                                                                                <  2:501417‑M2/136‑10 (MQ=255)          cgAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgcccaatc                                                                                                                       <  1:34465‑M2/136‑19 (MQ=255)          cgAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAGCGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgcccactc                                                                                                                       <  2:236301‑M2/136‑19 (MQ=255)                       gcACGCCTCGATATCGCGTGGTAGTAACAAGGGGGTCGCGCGCGCGTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgcccaatctcacaggcactac                                                                                                          >  2:363863‑M2/1‑105 (MQ=255)                       gcACGCCTCGATATCGCGTCGTACTAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgcccaatctcacaggcactac                                                                                                          >  2:361416‑M2/1‑105 (MQ=255)                            ccTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGCTTTACACGCGAAACTCCGCGCGGGCGGCGCTCCATCTCATGTGCGCCCaaaaaa                                                                                                     >  2:468745/1‑135 (MQ=18)                              tCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCCCGCGGGCGGCGCTAGATCTCAAGGGCGCCCCAAAACTa                                                                                                   >  2:301777/1‑136 (MQ=255)                                          cgtACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGCGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCAcc                                                                                       >  2:264660/1‑136 (MQ=255)                                          cgtACAAACAAGGCGGTCGCGCGCGCCTCGCACAGGAGGGATTGGCCAGAAACAAAGGAAGGAGCGGGTTTACCCGCGAAGCGCCGCGCCGGCGCCGCACCATCTCAAAGGCGCCCAAAAAAAAACGCCAGGCaac                                                                                       >  2:340365/1‑134 (MQ=18)                                          cgtACAAACAAGGCGGTCGCGCGCGACTGGTGCAGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcacaggcgctgaaaatcctccggcaaacacct                                                                                      <  1:437977‑M2/136‑52 (MQ=255)                                                cccaaggCGGTCGCGCGCAAATCCCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccag                                                                                 <  1:188247‑M2/134‑57 (MQ=255)                                                                             gaataattggcCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcc                                                    >  2:188247‑M2/6‑51 (MQ=255)                                                                               gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccag                                                 <  2:129459‑M2/136‑89 (MQ=255)                                                                               gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactcacccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccag                                                 <  2:287269‑M2/136‑89 (MQ=255)                                                                               gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcacaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccac                                                 <  1:14714‑M2/136‑89 (MQ=255)                                                                               gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcacaggcgctgaaactctcccggc                                                                                              <  2:379295‑M2/91‑44 (MQ=255)                                                                               gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcacaggcgctgaaactctcccggc                                                                                              >  1:379295‑M2/1‑48 (MQ=255)                                                                               gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatatcccaggcgctgaaactctcccggcgaacaccacccaggcgctgaaaaaccccccgcgaacaccaccccc                                                 <  1:303702‑M2/136‑89 (MQ=255)                                                                               gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgcgcgatctcccaggcgctgaaacgctcccggcgaacacctccccggcgcagaaaatcccccggcgcaccccgcccac                                                 <  1:378350‑M2/136‑89 (MQ=255)                                                                               gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCCcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccac                                                 <  1:233076‑M2/136‑89 (MQ=255)                                                                                taactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcgcc                                                 >  1:209026/5‑136 (MQ=255)                                                                                ggATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCCGCGGTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCCCCTGGAAGCCATCCTGCAATTTCCTGACGATCCCCAcgcc                                                 >  2:503612/1‑136 (MQ=37)                                                                                 aatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccagg                                                                                                                >  1:260539‑M2/2‑47 (MQ=255)                                                                                 aatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccagg                                                                                                                <  2:260539‑M2/71‑26 (MQ=255)                                                                                 aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCCGGCACCTGGAAGCCCTCCTGCAATTTCCTGACGATCACCTcgccc                                                >  2:415845/4‑135 (MQ=255)                                                                                 aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcgccg                                                >  1:380148/4‑136 (MQ=255)                                                                                 aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcgccg                                                >  2:445593/4‑136 (MQ=255)                                                                                     ggCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCAt                                            >  2:15215/1‑136 (MQ=255)                                                                                     ggCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTAATGGGCGCCCAAAAACAATCGCCAGGCACCAGGAATCCATCCTGCAATTTACAGACGATACCCTCGCCGCCAt                                            >  1:431064/1‑136 (MQ=25)                                                                                          gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggtgctcgatctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaa                                       <  1:296473‑M2/136‑99 (MQ=255)                                                                                          gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCCCCTGGAAGCCATACTGCAATTTCCTGACGATCACCACGCCGCCATGAcgc                                       >  2:268480/1‑136 (MQ=255)                                                                                          gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCa                                                                       >  2:123530/1‑104 (MQ=255)                                                                                          gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCa                                                                       <  1:123530/104‑1 (MQ=255)                                                                                          gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgg                                       >  1:251780/1‑135 (MQ=255)                                                                                          gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgc                                       >  2:103713/1‑136 (MQ=255)                                                                                          gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCAGACGATCACCTCGCCGCCATGAcgc                                       >  1:128055/1‑136 (MQ=255)                                                                                          gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACAATCGCCAGGCCCCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCAAGAcgc                                       >  1:413823/1‑136 (MQ=255)                                                                                          gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCCCCGCGCGGGCGGCGCTCGATCTCAAGGGCCCCCAAAAACTATCGCCAAGCACCAGGAAGCCATCCAGCAATTTACTGACGATCACCACGCCCCCAATAcgc                                       >  1:225649/1‑136 (MQ=21)                                                                                          gAAACAAACGTAGGAGCGGGATAACCCGCGAAGCGCCGCGCCGGCGGCGCACGATCACAAGGGCGCCCAAAAACAAACGCCAGGCACCTGGAAGCCAACCTGCAATTTCCAGACGATCACCTCGCCGCCATGAcgc                                       >  2:101987/1‑136 (MQ=37)                                                                                            aacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCCCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAAATAACGCCAGGCACCAGGAAGCCATCCATCAATTTCCTGACGAACACCTCGCCGCCATGAagcgc                                     >  2:361118/1‑135 (MQ=25)                                                                                                   gTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTcaca                              >  2:307556/1‑136 (MQ=255)                                                                                                   gTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTcaca                              >  1:415715/1‑136 (MQ=255)                                                                                                    tAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCAACCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACaa                             >  1:178380/1‑136 (MQ=255)                                                                                                        aGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAAc                         >  1:210042/1‑136 (MQ=255)                                                                                                             gTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATcc                    >  1:287188/1‑135 (MQ=255)                                                                                                                   cggcgAAGCGCCGCGCGGGCGGCGGTCGATCTGATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGTCGCCATGACGCGAACTCACAAAAACCATCACAAATc              <  1:468745/134‑1 (MQ=255)                                                                                                                   ccGCTAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATc              <  1:84168/136‑1 (MQ=255)                                                                                                                   ccGCGAAGCGCCGCGCGGGCGTCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATc              <  2:293672/136‑1 (MQ=255)                                                                                                                        gggcgcCGCCCGCGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGTCTa         <  1:324792/134‑1 (MQ=255)                                                                                                                          gcgcCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacccctccccggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcg       <  1:268709‑M2/136‑131 (MQ=255)                                                                                                                          gcgcCGcgcgggcggcgctcgatctcccaggcgctgaaactctccccgcgaacacctcccaggcgctgaaaaaaccccggcgaacacctcccaggcgctgaaaacctcccgccaaacccctacccgccaaagcgcg       <  1:95604‑M2/136‑131 (MQ=255)                                                                                                                              cgcgcgGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGTCTAATtctc   <  2:380148/136‑1 (MQ=255)                                                                                                                              cgcgcgGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGTCTAATtctc   <  2:189290/136‑1 (MQ=255)                                                                                                                               gcgcgGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGTCTAATTCTCa  <  1:15215/136‑1 (MQ=255)                                                                                                                               |                                                                                                                                        ACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGTCTAATTCTCA  >  NC_002947/5993828‑5994089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.