| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4988800 | 8 (0.360) | 3 (0.180) | 3/200 | 1.1 | 31.5% | intergenic (‑253/+69) | flgB/cheR | flagellar basal‑body rod protein FlgB/chemotaxis protein methyltransferase |
| ? | NC_002947 | = 5465626 | 7 (0.410) | intergenic (+10/‑207) | holA/PP_4797 | DNA polymerase III subunit delta/hypothetical protein | |||||
GGTTTTGCGGCGCGGTACTGTCAGATTGATGCCAGAAAAGCGGCAAAGGCCTTCCGCCTGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAA‑CCC‑GCTCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4988637‑4988800‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctcttcgcgggtaaa‑ccc‑gctcctacgACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCATCAACAGCGACAGCCGCGCCAGGCCAATCCACGGCGAACCTTCAGCCTGCCCTTTGATCTGCGCATCGATTCGCTGGGCATCCTGCAGCA < NC_002947/5465626‑5465492 GGTTTTGCGGCGCGGTACTGTCAGATTGATGCCAGAAAAGCGGCAAAGGCCTTCCGCCTGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGG > 2:131455/1‑136GGTTTTGCGGCGCGGTACTGTCAGATTGATGCCAGAAAAGCGGCAAAGGCCTTCCGCCTGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGG > 2:270027/1‑136GGTTTTGCGGCGCGGTACTGTCAGATTGATGCCAGAAAAGCGGCAAAGGCCTTCCGCCTGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGG > 2:68549/1‑136 CTGTCAGATTGATGCCAGAAAAGCGGCAAAGGCCTTCCGCCTGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAA‑C < 2:348110/136‑1 GCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAA‑CCC‑GCTCCTACGACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCATCAACAGCGACA > 1:415896/1‑136 CAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAA‑CCC‑GCTCCTACGACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCATCAACAGCGACAGCCG < 2:415896/136‑1 ttttaTTTGCTGGGCGGGCCTCTGCG‑GGGTAAACCCC‑GCTCCTACGACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCATCAACAGCGACAGCCGCGCCAGGCCAATCCACGGCGAACCTTCAG < 1:326036/131‑1 AAA‑CCCGGCTCTTACGACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCATCAACAGCGACAGCCGCGCCAGGCCAATCCACGGCGAACCTTCAGCCTGCCCTTTGATCTGCGCATCGATTCGCT < 1:61584/136‑1 CC‑GCTCCTACGACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCATCAACAGCGACAGCCGCGCCAGGCCAATCCACGGCGAACCTTCAGCCTGCCCTTTGATCTGCGCATCGATTCGCTGGGCA > 2:277462/1‑136 CC‑GCTCCTACGACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCATCAACAGCGACAGCCGCGCCAGGCCAATCCACGGCGAACCTTCAGCCTGCCCTTTGATCTGCGCATCGATTCGCTGGGCA > 2:559623/1‑136 GACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCATCAACAGCGACAGCCGCGCCAGGCCAATCCACGGCGAACCTTCAGCCTGCCCTTTGATCTGCGCATCGATTCGCTGGGCATCCTGCAGCA < 2:115165/136‑1 GGTTTTGCGGCGCGGTACTGTCAGATTGATGCCAGAAAAGCGGCAAAGGCCTTCCGCCTGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAA‑CCC‑GCTCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4988637‑4988800‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctcttcgcgggtaaa‑ccc‑gctcctacgACGGCCGCAGTTACTCGGGAGGGAGGGCCAGGCGCTGGCCAGCCATCAACAGCGACAGCCGCGCCAGGCCAATCCACGGCGAACCTTCAGCCTGCCCTTTGATCTGCGCATCGATTCGCTGGGCATCCTGCAGCA < NC_002947/5465626‑5465492 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |