| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4988800 | 8 (0.360) | 3 (0.180) | 3/200 | 1.1 | 31.5% | intergenic (‑253/+69) | flgB/cheR | flagellar basal‑body rod protein FlgB/chemotaxis protein methyltransferase |
| ? | NC_002947 | = 5465626 | 7 (0.410) | intergenic (+10/‑207) | holA/PP_4797 | DNA polymerase III subunit delta/hypothetical protein | |||||
GCCTTCCGCCTGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAA‑CCC‑GCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTC > NC_002947/4988685‑4988935 | gCCTTCCGCCTGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAA‑CCC‑GCTCCTACGGGGAGCTCGGCAGGAACAGc < 1:488196/136‑1 (MQ=255) ccGCCTGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAA‑CCC‑GCTCCTACGGGGAGCTCGGCAGGAACAGCGGATa < 1:162984/136‑1 (MQ=255) gCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAA‑CCC‑GCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCgg < 2:284282/136‑1 (MQ=255) gcggcaaaagcggcaaaaCAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAA‑CCC‑GCTCCTACGacggccgcagttactcgggagggagggccaggcgctggccagccatcaacagcgaca > 1:415896‑M1/1‑79 (MQ=255) caaaagcggcaaaaCAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAA‑CCC‑GCTCCTACGacggccgcagttactcgggagggagggccaggcgctggccagccatcaacagcgacagccg < 2:415896‑M1/136‑62 (MQ=255) tGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAA‑CCC‑GCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAATAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTa < 2:526222/136‑1 (MQ=255) ttttatttgctggGCGGGCCTCTGCG‑GGGTAAACCCC‑GCTCCTACGacggccgcagttactcgggagggagggccaggcgctggccagccatcaacagcgacagccgcgccaggccaatccacggcgaaccttcag < 1:326036‑M1/131‑91 (MQ=255) ccTGGGCCGGCCTCTTCGCGGGTAAA‑CTC‑GCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGct < 1:68549/136‑1 (MQ=255) ccTGGGCCGGCCTCTTCGCGGGTAAA‑CCC‑GCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGct < 1:131455/136‑1 (MQ=255) ccTGGGCCGGCCTCTTCGCGGGTAAA‑CCC‑GCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGct < 1:270027/136‑1 (MQ=255) tctTCGCGGGTAAA‑CCC‑GCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCAt > 2:128653/1‑136 (MQ=255) aaa‑CCCGGCTCTTACGacggccgcagttactcgggagggagggccaggcgctggccagccatcaacagcgacagccgcgccaggccaatccacggcgaaccttcagcctgccctttgatctgcgcatcgattcgct < 1:61584‑M1/136‑121 (MQ=255) cc‑GCTCCTACGacggccgcagttactcgggagggagggccaggcgctggccagccatcaacagcgacagccgcgccaggccaatccacggcgaaccttcagcctgccctttgatctgcgcatcgattcgctgggca > 2:277462‑M1/1‑11 (MQ=255) cc‑GCTCCTACGacggccgcagttactcgggagggagggccaggcgctggccagccatcaacagcgacagccgcgccaggccaatccacggcgaaccttcagcctgccctttgatctgcgcatcgattcgctgggca > 2:559623‑M1/1‑11 (MQ=255) gacggccgcagttactcgggagggagggccaggcgctggccagccatcaacagcgacagccgcgccaggccaatccacggcgaaccttcagcctgccctttgatctgcgcatcgattcgctgggcatcctgcagca < 2:115165‑M1/136‑136 (MQ=255) | GCCTTCCGCCTGAGGTGACAAAAGCGGCAATTGATGGGCGGCAAAAGCGGCAAAACAAAAAATTGACGTCAGTGTTTTCCTGGGCCGGCCTCTTCGCGGGTAAA‑CCC‑GCTCCTACGGGGAGCTCGGCAGGAACAGCGGATAGGCATACAAAAAGGCCGGCATCTCTCGATACCGGCCTTCGTGCTTACTTGGCCTGGTAGATGATCCCCGGGCTGCACTGCACCATCTGGTAATGGTCCGGCAAGCCGTTC > NC_002947/4988685‑4988935 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |