New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4813152	0 (0.000)	11 (0.490)	5/264	1.0	34.4%	intergenic (‑267/‑288)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5993975	42 (1.870)					intergenic (+264/‑282)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

CACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGTCTAATTCTCAGCTGGGTCCTACTTCCCCGCG  >  NC_002947/5993851‑5994110                                                                                                                             |                                                                                                                                        cACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCaa                                                                                                                              >  1:107466/1‑136 (MQ=255)                     tACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTg                                                                                                          >  2:217679/1‑136 (MQ=255)                        aaacaaGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGaa                                                                                                       >  2:356663/1‑136 (MQ=255)                         cccaaggCGGTCGCGCGCAAATCCCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcaggcgctgaaactctcccggcgaacacctaccac                                                                                                      <  2:435351‑M2/134‑36 (MQ=255)                                  gTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGc                                                                                             >  1:415951/1‑136 (MQ=255)                                  gTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCCCGGGCCGCGCTCGCACTCATGGGCGCCCAAAAACAATAGCCAGGCCCCTGGAAGCCAACCTGc                                                                                             >  1:574140/1‑136 (MQ=25)                                                        gggATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCa                                                                                                                                         <  1:215736/70‑1 (MQ=40)                                                        gggATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCa                                                                                                                                         >  2:215736/1‑70 (MQ=40)                                                        gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccag                                                                      <  1:359445‑M2/136‑68 (MQ=255)                                                        gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacaccacccac                                                                      <  1:427326‑M2/136‑68 (MQ=255)                                                        gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaa                                                                                >  1:149372‑M2/1‑69 (MQ=255)                                                        gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaa                                                                                <  2:149372‑M2/126‑58 (MQ=255)                                                        gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaactctcccggc                                                                                                                   >  2:34834‑M2/1‑69 (MQ=255)                                                        gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaactctcccggc                                                                                                                   <  1:34834‑M2/91‑23 (MQ=255)                                                        gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCCGGCGGCGCACGATCTCAcaggccctgaaactatccccgcgaacacctcccaggcgctgaaaaaaccccggcgaacaccaccccc                                                                      <  1:129769‑M2/136‑68 (MQ=255)                                                        gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCCCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaactcacccggcgaacccctcccaggcgctgaaaataccccggccaaccccacccac                                                                      <  2:422757‑M2/136‑68 (MQ=255)                                                        ataactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCCCGCGGGCCGCGCTCGAACTCATAGGCGCCCAAAAACAAACACCACGCACCAAGAAGCCATCCAACAAATTCCTAACGATCACCAcgc                                                                       >  2:68553/6‑136 (MQ=12)                                                         taactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCGGGAAGCCATCCTGCAATTTCCTGACGAACACCTcgcc                                                                      >  2:209536/5‑136 (MQ=255)                                                          aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcgccg                                                                     >  2:19623/4‑136 (MQ=255)                                                          aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcgccg                                                                     >  2:357529/4‑136 (MQ=255)                                                          aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcgccg                                                                     >  2:134026/4‑136 (MQ=255)                                                          aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcgccg                                                                     >  2:396875/4‑136 (MQ=255)                                                          aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcgccg                                                                     >  1:534777/4‑136 (MQ=255)                                                          aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcgccc                                                                     >  2:358173/4‑135 (MQ=255)                                                          aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcgccc                                                                     >  2:210415/4‑135 (MQ=255)                                                          aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCAcgccc                                                                     >  1:221821/4‑135 (MQ=255)                                                          aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCAGGAAGCCATCCAGCAATTTCCTGACGCTCACCTcgccg                                                                     >  2:124835/4‑136 (MQ=25)                                                          aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAAGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTCCAAATTCCAGACGATCACCTcgccg                                                                     >  2:322617/4‑136 (MQ=25)                                                          aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCCCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTAACGCCAGGCACCAGGAAGCCATGCAGCAATATCCTGACGAACACCAcgccc                                                                     >  1:556260/4‑135 (MQ=21)                                                              ggCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCAt                                                                 >  1:363373/1‑136 (MQ=255)                                                                   gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcag                                                                                                                                      >  2:335017‑M2/1‑59 (MQ=255)                                                                   gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcag                                                                                                                                      <  1:335017‑M2/62‑4 (MQ=255)                                                                   gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCCAAAACAATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgc                                                            >  2:27841/1‑136 (MQ=255)                                                                   gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgc                                                            >  2:491375/1‑136 (MQ=255)                                                                   gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgc                                                            >  2:385756/1‑136 (MQ=255)                                                                   gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgc                                                            >  2:31142/1‑136 (MQ=255)                                                                   gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgc                                                            <  1:356663/136‑1 (MQ=255)                                                                   gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgc                                                            >  2:454189/1‑136 (MQ=255)                                                                   gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCCGCGCTCGATCTCAATGGCGCCCAAAAACAATAGCCCGGCACCTGGAAGCCATCCTGCAATTTACTGACGATAACCTCGCCGCCATGAcgc                                                            >  2:113320/1‑136 (MQ=25)                                                                   gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCCCCGCGCCGGCGGCGCTCGAACTCATGGGCGCCCAAAAACTAAACCCAAGCACCACCAAACCAACCAGCAAATTACAGACCATCACCTACCCGCCATTAcgc                                                            >  2:235897/1‑136 (MQ=12)                                                                    aaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAAATTCCTGACGATCACCTCGCCGCCATGCcgcg                                                           >  2:458094/1‑136 (MQ=255)                                                                    aaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAAATTCCTGACGATCACCTCGCCGCCATGAcgcg                                                           >  2:464471/1‑136 (MQ=255)                                                                     aacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCAGCGCGGGCGGCGCTAGATCTCATGGGCGCCCAAAAAATATCGCAAGGCACCTGGAAGCCATACTGCAATTTACTGACGATCAACTCGCCGCCATGACGCGa                                                          >  1:17688/1‑136 (MQ=37)                                                                            gTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTcaca                                                   >  1:456826/1‑136 (MQ=255)                                                                                       tttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATcac                                        <  2:107466/136‑1 (MQ=255)                                                                                        ttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCCCAAAAACCATcaca                                       >  1:32170/1‑136 (MQ=255)                                                                                            gggtgAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATc                                   <  1:68553/132‑1 (MQ=255)                                                                                            ccGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATc                                   <  2:534777/136‑1 (MQ=255)                                                                                              attgggcgcCGCCCGCGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGt                                 >  2:327037/6‑136 (MQ=255)                                                                                                  aGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCCTCCTGCAATTTACTGACGATCACCTAGCCGCCATGAAGCGAAATAACAAAAACCATCACAAATCGTGTaa                             >  1:380722/1‑136 (MQ=38)                                                                                                  aGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCACGCACCTGGAAGCCATCCTGCAATTTACTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCgaataa                             >  1:71917/1‑131 (MQ=255)                                                                                                      ccgcGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGTCTAATtct                         <  1:552667/136‑1 (MQ=255)                                                                                                       cgcgcgGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGTCTAATtctc                        <  1:250058/136‑1 (MQ=255)                                                                                                                        aTCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGTCTAATTCTCAGCTGGGTCCTACTTcc       <  1:235897/136‑1 (MQ=255)                                                                                                                             aTGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGTCTAATTCTCAGCTGGGTCCTACTTCCCcgcg  <  1:396875/136‑1 (MQ=255)                                                                                                                             |                                                                                                                                        CACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCGTCTAATTCTCAGCTGGGTCCTACTTCCCCGCG  >  NC_002947/5993851‑5994110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.