New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1015854	1 (0.060)	7 (0.460)	7/254	0.5	58.4%	intergenic (‑81/‑687)	SBRG_Ecoli_galE/prfC	SBRG_Ecoli_galE/peptide chain release factor 3
	?	NC_002947	= 5067412	9 (0.600)					coding (1092/1098 nt)	PP_4459	transposase

TTAGCGCTGCACAACGCCCAACCCTCTCGGTACGTCTGGAGCGCGAAAGGTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGGCCCTACCCAGACACTATGAGCAATGTCTCTTAGGAATAGATTGAATTACTTCCCCAACCCCTTTGCTAGCAGCGC  >  NC_002947/5067281‑5067538                                                                                                                                    |                                                                                                                               ttAGCGCTGCACAACGCCCAACCCTCTCGGTACGTCTGGAGCGCGAAAGGTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGCGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGAcact                                                                                                                            <  2:372092‑M2/136‑5 (MQ=255) ttAGCGCTGCACAACGCCCAACCCTCTCGGTACGTCTGGAGCGCGAAAGGTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGAcact                                                                                                                            <  2:10778‑M2/136‑5 (MQ=255)       cTGCACAACGCCCAACCCTCTCGGTACGTCTGGAGCGCGAAAGGTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTg                                                                                                                      <  1:394538/136‑1 (MQ=255)                              gTACGTCTGGAGCGCGAAAGGTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGt                                                                                               >  1:70080/1‑136 (MQ=255)                               tACGTCTGGAGCGCGAAAGGTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTg                                                                                              <  1:150187/136‑1 (MQ=255)                               tACGTCTGGAGCGCGAAAGGTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTg                                                                                              <  1:332378/136‑1 (MQ=255)                                                            cTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGGCCCTACCCAGac                                                                 <  1:133496/136‑1 (MQ=255)                                                            cTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGGCCCTACCCAGac                                                                 <  1:208181/136‑1 (MQ=255)                                                                                   gagaGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGGCCCTACCCAGACACTATGAGCAATGTCTCTTAGGa                                          >  2:390368/1‑136 (MQ=255)                                                                                         cAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcataccataagcctaatggagcgaattatgagagttct                                    <  2:247101‑M2/136‑93 (MQ=255)                                                                                             ggCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcataccataagcctaatggagcgaattatgagagttctggtt                                >  1:117299‑M2/1‑40 (MQ=255)                                                                                             ggCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgca                                                                                                 >  1:269662‑M2/1‑40 (MQ=255)                                                                                             ggCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgca                                                                                                 <  2:269662‑M2/71‑32 (MQ=255)                                                                                                   cgAGAATAAAGAGAACGTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcataccataagcctaatggagcgaattatgagagttctggttaccggt                          >  2:394866‑M2/1‑34 (MQ=255)                                                                                                      gaATAAAGAGAACGTTTTATCTGAGACAGGAcactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcataccataagcctaatggagcgaattatgagagttctggttaccggtggt                       <  2:400500‑M2/136‑106 (MQ=255)                                                                                                                    ttttATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTGAGGAGAGCCTGGGGAGGGCCTACCCAGACACTATCAGCAATGTCTCTTAGGAATAGAGTGAATTACTTCCCCACCCCCATTGCTa         >  2:151588/1‑136 (MQ=255)                                                                                                                           tGAGTCAGGAcactaatttattccatgtcacacttttcgcatctttgttatgctatggttatttcataccataagcctaatggagcgaattatgagagttctggttaccggtggtagcggttacattggaagtcat  >  1:184259‑M2/1‑10 (MQ=255)                                                                                                                           tGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGGCCCTACCCAGACACTATGAGCAATGTCTCTTAGGAATAGATTGAATTACTTCCCCAACCCCTTTGCTAGCAgcgc  <  1:306014/136‑1 (MQ=255)                                                                                                                                    |                                                                                                                               TTAGCGCTGCACAACGCCCAACCCTCTCGGTACGTCTGGAGCGCGAAAGGTGAAGACATCTTGCGCAAGATCCAGGGTGCCCGAGAGGCAATGGCACGCGAGAATAAAGAGAACGTTTTATCTGAGACAGGACACTAGGCTGTAGCTACTCAGACAGTCGTCGGTGAGGCGAGCCTGGGGAGGCCCTACCCAGACACTATGAGCAATGTCTCTTAGGAATAGATTGAATTACTTCCCCAACCCCTTTGCTAGCAGCGC  >  NC_002947/5067281‑5067538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.