New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3528414	NA (NA)	16 (0.050)	11/260	NT	NA	coding (135/1533 nt)	PP_3114	transposase
	?	NC_002947	= 3528442	NA (NA)					coding (163/1533 nt)	PP_3114	transposase

GCTCAAGCAACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAGCGCTTGTTCGGGCGCAAGACCGAGCAGACTGGCGATGCGGCGACACCACAGTTGCC  >  NC_002947/3528321‑3528470                                                                                                                          |                             gcccAAGCAACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAGCGCTTGTTCGGGCGCAAGACCGAGCAGACTGGCGATGCGGCGACACCACAGTTGcc  >  1:2920211/4‑150 (MQ=1)                                                                                                                          |                             GCTCAAGCAACTGCTTGAGCAGATGATCCACGAGCGCGCGTCCGACAAGAGCAAGATCGTTCATCTCGAAGAGGAAGTTGCGCTGTTGCGCCAGCGCTTGTTCGGGCGCAAGACCGAGCAGACTGGCGATGCGGCGACACCACAGTTGCC  >  NC_002947/3528321‑3528470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.