Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_002947 1,515,811 (33-bp)2→1 pseudogene (715‑747/1851 nt) PP_1325 ← putative lipoprotein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 1515769 1515801 33 24 [0] [1] 25 PP_1325 putative lipoprotein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1515802 =1 (0.060)16 (1.470) 13/180 0.1 97.9% pseudogene (756/1851 nt) PP_1325 putative lipoprotein
?NC_002947 = 1515768 0 (0.000)pseudogene (790/1851 nt) PP_1325 putative lipoprotein

AACACCTGTACCGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCG  >  NC_002947/1515644‑1515901
                                                                                                                            |                                                                                                                                     
aaCACCTGTACCGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcg                                                                                                                            <  2:262613‑M2/136‑12 (MQ=255)
          ccGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggc                                                                                                                  >  1:193416‑M2/1‑115 (MQ=255)
          ccGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggc                                                                                                                  <  2:256082‑M2/136‑22 (MQ=255)
          ccGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCACCGCGCGGGCTACACCGCCCAGCGGGCCTTCCTCAGGCAGCAGCACGGCGATcttggtcagcggctggctggc                                                                                                                  <  2:220849‑M2/136‑22 (MQ=255)
          ccGCAGGCGCTGGCTGGCCGCTATGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTACCTGAGCCAGCAGCAGGGCGATcttggtcagcggctggctggc                                                                                                                  <  2:294918‑M2/136‑22 (MQ=255)
                gcgcTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctc                                                                                                            <  2:89328‑M2/136‑28 (MQ=255)
                     ggctggcCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgg                                                                                                       <  1:156666‑M2/136‑33 (MQ=255)
                           ccGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttgg                                                                                                 >  2:383592‑M2/1‑98 (MQ=255)
                                                        aatGAAGCCATCGCGCAGGGGGCGGGCTACTCCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggca                                                                    >  1:53544‑M2/2‑69 (MQ=255)
                                                             aGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtg                                                               <  2:64295‑M2/136‑73 (MQ=255)
                                                                     cgcAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggt                                                       <  2:104708‑M2/136‑81 (MQ=255)
                                                                             gcgGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttg                                               <  1:413907‑M2/136‑89 (MQ=255)
                                                                                ggCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttgacc                                            >  1:262613‑M2/1‑45 (MQ=255)
                                                                                       ccGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttgccccaggctt                                     <  2:393220‑M2/136‑99 (MQ=255)
                                                                                       ccGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctgactggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttgacccaggctt                                     <  2:102858‑M2/136‑99 (MQ=255)
                                                                                             aGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttgacccaggcttcgatgg                               <  1:305239‑M2/136‑105 (MQ=255)
                                                                                                    cTTCCTGAGGCAGCTGCTGGGCGATcttggtcagcggcgggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgtgtgctgtttgacccaggcttcgatggccgcttg                        >  2:33231‑M2/1‑25 (MQ=255)
                                                                                                       ccTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttgacccaggcttcgatggccgcttgctg                     <  2:374369‑M2/136‑115 (MQ=255)
                                                                                                       ccTGAGGCAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttgacccaggcttcgatggccgcttgctg                     <  2:389878‑M2/136‑115 (MQ=255)
                                                                                                         tGAGGGAGCAGCAGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttgacccaggcttcgatggccgcttgctgct                   >  2:273309‑M2/1‑20 (MQ=255)
                                                                                                             gcagcagcaGGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttgacccaggcttcgatggccgcttgctgctgctc               >  1:357654‑M2/1‑16 (MQ=255)
                                                                                                                    cagGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttgacccaggcttcgatggccgcttgctgctgctccagggtg        <  2:404899‑M2/136‑128 (MQ=255)
                                                                                                                    cagGGCGATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttgacccaggcttcgatggccgcttgctgctgctccagggtg        <  1:217836‑M2/136‑128 (MQ=255)
                                                                                                                          gATcttggtcagcggctggctggccagctccttgagcttggtcagggccagcggcagttgctgggcggcagggtggtccgggtgctgtttgacccaggcttcgatggccgcttgctgctgctccagggtgccggcg  <  2:101017‑M2/136‑134 (MQ=255)
                                                                                                                            |                                                                                                                                     
AACACCTGTACCGCAGGCGCTGGCTGGCCGCTTTGCTGGGCCTGGAAGTGGGCGGCCATGAAGCCATCGCGCAGGGCGCGGGCTACACCGGCCAGCGGGCCTTCCTGAGGCAGCAGCAGGGCGATCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGCGGCTGGCTGGCCAGCTCCTTGAGCTTGGTCAGGGCCAGCGGCAGTTGCTGGGCGGCAGGGTGGTCCGGGTGCTGTTTGACCCAGGCTTCG  >  NC_002947/1515644‑1515901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑