New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 652786	19 (0.980)	5 (0.360)	3/174	NT	42.5%	coding (1960/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	4813203 =	0 (0.000)					intergenic (‑318/‑237)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2

GGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTG  >  NC_002947/652657‑652897                                                                                                                                  |                                                                                                                ggcggcGCTTGGCGGAGTCGCGTGGTGGAAGGTGCCCGGCTTGTTAACGTATGCGAAGGAATAATGGGCCCGAAACAAACGTAGGAGGGGGTTTACCCGGGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCt                                                                                                           <  2:199992/136‑1 (MQ=21)   cggcgCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGa                                                                                                         >  2:346895/1‑136 (MQ=255)         aTGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACACGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTc                                                                                                   <  1:44356/136‑1 (MQ=255)                                gTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAACCGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCATGAACGCTCGCACCGCCCGGTTAAGCTCACCg                                                                            <  2:311049/136‑1 (MQ=255)                                gTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCg                                                                            <  2:306822/136‑1 (MQ=255)                                 tGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGCCCCTGAACCCTCCCACCGCCCGGTTCAGCTCACCGc                                                                           >  2:448424/1‑136 (MQ=255)                                 tGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGc                                                                           <  2:2414/136‑1 (MQ=255)                                      ggCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAgg                                                                      >  1:205616/1‑136 (MQ=255)                                         aTGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCACCATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTAACCGCCCACGCta                                                                   >  1:542246/1‑135 (MQ=255)                                                gggATGCGCAGTAATAATTGGCCCTAAACAACCGTAGGAGCGGGTTTACCCGCGACGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCt                                                            <  1:448424/135‑1 (MQ=255)                                                     gcgcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTAACCGCCCAGGCTCAGCAGCTGTTCa                                                       >  1:105642/1‑136 (MQ=255)                                                        cAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCCGGCTCAGCAGCTGTTCAccc                                                    >  1:311259/1‑136 (MQ=255)                                                             ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtcccctcaaaattccaacgc                                               >  1:10435‑M1/1‑70 (MQ=255)                                                             ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgc                                               >  1:539192‑M1/1‑70 (MQ=255)                                                             ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggc                                                                                                            >  2:94923‑M1/1‑70 (MQ=255)                                                             ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggc                                                                                                            <  1:94923‑M1/75‑6 (MQ=255)                                                             ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                             <  1:419246‑M1/74‑5 (MQ=255)                                                             ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                             >  2:499738‑M1/1‑70 (MQ=255)                                                             ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                             >  2:422601‑M1/1‑70 (MQ=255)                                                             ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                             >  2:419246‑M1/1‑70 (MQ=255)                                                             ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                             >  2:385293‑M1/1‑70 (MQ=255)                                                             ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                             <  1:385293‑M1/74‑5 (MQ=255)                                                             ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                             <  1:499738‑M1/74‑5 (MQ=255)                                                             ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                             <  1:422601‑M1/74‑5 (MQ=255)                                                             ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTAACCGCGAAGCGCCGCGCGGGCGGCACTCGATCTCCcaggcgctgaaaatcctcccgcaaacacctcaaaaataaacagccgtcaacacaaaattacaacgc                                               >  2:288368‑M1/1‑70 (MQ=255)                                                              taatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTc                                                        <  1:304003/126‑1 (MQ=255)                                                              taatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTc                                                        >  2:304003/1‑126 (MQ=255)                                                                           acaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCaa                                 <  2:205616/136‑1 (MQ=255)                                                                            caaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAAAGCTCGCACCGCCCGGTTAAGCTCACCCCCCACGCTAAGCAGCTGTTCACCCTGTTTACGCCCCTCCCCaaa                                >  1:199801/1‑135 (MQ=37)                                                                                   aGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgccgccccctcaaaattccaacgc                         >  1:512143‑M1/1‑48 (MQ=255)                                                                                      cgggggttaACCCGCTAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgccgccccctcaaaattccaacgccgc                      <  1:10894‑M1/133‑92 (MQ=255)                                                                                        ggggTTAACCCGCTAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGtt                    <  1:248417/135‑1 (MQ=255)                                                                                              tACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                             >  2:417502‑M1/1‑37 (MQ=255)                                                                                              tACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                             <  1:417502‑M1/41‑5 (MQ=255)                                                                                                       aGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTc     >  1:445493/1‑136 (MQ=255)                                                                                                         cgccgcGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGt   <  2:105642/136‑1 (MQ=255)                                                                                                          gccgcGCGGGCGGCGCTCGAAATCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccacacaaaattccaacgccgccccctcaaaattccaaccccgccgcccctcgaaaatacaaaa  >  1:94511‑M1/1‑25 (MQ=255)                                                                                                                                  |                                                                                                                GGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTG  >  NC_002947/652657‑652897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.