| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 652786 | 19 (0.980) | 5 (0.360) | 3/174 | NT | 42.5% | coding (1960/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | 4813203 = | 0 (0.000) | intergenic (‑318/‑237) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
CGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACA > NC_002947/4813133‑4813313 | ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 1:385293‑M2/4‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 1:419246‑M2/4‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 1:422601‑M2/4‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 1:499738‑M2/4‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 2:499738‑M2/71‑74 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 2:385293‑M2/71‑74 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 2:422601‑M2/71‑74 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 2:419246‑M2/71‑74 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGgc > 2:94923‑M2/71‑75 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGgc < 1:94923‑M2/5‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCCCTCAAAATTCCAAcgc > 1:10435‑M2/71‑136 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc > 1:539192‑M2/71‑136 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttaaccgcgaagcgccgcgcgggcggcactcgatctccCAGGCGCTGAAAATCCTCCCGCAAACACCTCAAAAATAAACAGCCGTCAACACAAAATTACAAcgc > 2:288368‑M2/71‑136 (MQ=255) aggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAcgc > 1:512143‑M2/49‑136 (MQ=255) cgggggttaacccgctaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAcgccgc < 1:10894‑M2/91‑1 (MQ=255) tacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 2:417502‑M2/38‑41 (MQ=255) tacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 1:417502‑M2/4‑1 (MQ=255) gccgcgcgggcggcgctcgaaatcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACACAAAATTCCAACGCCGCCCCCTCAAAATTCCAACCCCGCCGCCCCTCGAAAAtacaaaa > 1:94511‑M2/26‑134 (MQ=255) | CGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACA > NC_002947/4813133‑4813313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |