New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4027890 =	49 (3.280)	6 (0.420)	5/234	NT	15.4%	intergenic (‑592/+76)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
	?	NC_002947	4912947 =	19 (1.330)					coding (72/198 nt)	PP_4317	hypothetical protein

TGGTGTGGTTCGCCAAGCCGCCCTTTACCGCTAAGGCGGGCCCGGCATCGGCGGGGCATTGAGCTAAAATCAAGGCAAGATCCCGATGCTCTCGCTCTCGCTCTCGCTCTCGCTCTCGCTCTCGCTTCGGCTTTTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4028027‑4027890 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgatCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGG  >  NC_002947/4912947‑4913074                                                                                                                                                                                                                                                                            TGGTGTGGTTCGCCAAGCCGCCCTTTACCGCTAAGGCGGGCCCGGCATCGGCGGGGCATTGAGCTAAAATCAAGGCAAGATCCCGATGCTCTCGCTCTCGCTCTCGCTCTCGCTCTCGCTCTCGCTTCGGCTTTTG                                                                                                                                    <  2:415241/136‑1                                    GCGGGCCCGGCATCGGCGGGGCATTGAGCTAAAATCAAGGCAAGATCCCGATGCTCTCGCTCTCGCTCTCGCTCTCGCTCTCGCTCTCGCTTCGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGG                                                                                                 >  1:364689/1‑136                                                         CATTGAGCTAAAATCAAGGCAAGATCCCGATGCTCTCGCTCTCGCTCTCGCTCTCGCTCTCGCTCTCGCTTCGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG                                                                            >  1:27166/1‑136                                                                                         CTCTCGCTCTCGCTCTCGCTCTCGCTCTCGCTCTCGCTTCGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAG                                            <  1:405336/136‑1                                                                                         CTCTCGCTCTCGCTCTCGCTCTCGCTCTCGCTCTCGCTTCGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAG                                            >  2:405336/1‑136                                                                                                               CGCTCTCGCTCTCGCTTCGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGACCGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCGGTCAAGCGCTGAGGCCCCTGTATGGGGC                      <  2:364689/136‑1                                                                                                               CGCTCTCGCTCTCGCTTCGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGC                      <  2:27166/136‑1                                                                                                                                   CTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGG  >  1:370553/1‑136                                                                                                                                   CTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGG  >  1:68596/1‑136                                                                                                                                                                                                                                                                            TGGTGTGGTTCGCCAAGCCGCCCTTTACCGCTAAGGCGGGCCCGGCATCGGCGGGGCATTGAGCTAAAATCAAGGCAAGATCCCGATGCTCTCGCTCTCGCTCTCGCTCTCGCTCTCGCTCTCGCTTCGGCTTTTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4028027‑4027890 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgatCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGG  >  NC_002947/4912947‑4913074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.