New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4027890 =	49 (3.280)	6 (0.420)	5/234	NT	15.4%	intergenic (‑592/+76)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
	?	NC_002947	4912947 =	19 (1.330)					coding (72/198 nt)	PP_4317	hypothetical protein

CGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGG  >  NC_002947/4912816‑4913082                                                                                                                                    |                                                                                                                                        cGGAGTCAGCGGGCAGTACAGTCAATGGAAATAACAATGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGttgatcttgatcttgatcttgatcttgatcttga                                                                                                                                     <  2:217537/136‑1 (MQ=255) cGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGttgatcttgatcttgatcttgatcttgatcttga                                                                                                                                     <  1:149213/136‑1 (MQ=255)                         aTGGAAATAACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACtt                                                                                                             >  1:348598/1‑136 (MQ=255)                           ggAAATAACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCa                                                                                                           >  2:221585/1‑136 (MQ=255)                             gcgggcccggcatcggcggggcattgagctaaaatcaaggcaagatcccgatgctctcgctctcgctctcgctctcgctctcgctctcgcttcggcttttgatCTTGATCTTGATCTTGATCTTCGCGACTTCagg                                                                                                         >  1:364689‑M2/104‑136 (MQ=255)                              aaTAACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCagga                                                                                                        <  1:343393/136‑1 (MQ=255)                                  aCAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGcc                                                                                                    >  2:320204/1‑136 (MQ=255)                                   cAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCg                                                                                                   >  2:163300/1‑136 (MQ=255)                                                  cattgagctaaaatcaaggcaagatcccgatgctctcgctctcgctctcgctctcgctctcgctctcgcttcggcttttgatCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCg                                                                                    >  1:27166‑M2/83‑136 (MQ=255)                                                        tgttgtTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCa                                                                              >  1:90205/1‑136 (MQ=255)                                                        tgttgtTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCa                                                                              >  1:56476/1‑136 (MQ=255)                                                        tattgttgCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCa                                                                              >  2:319081/3‑136 (MQ=255)                                                                  gttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGc                                                                    >  1:423197/1‑136 (MQ=40)                                                                       tgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGa                                                               >  2:389810/1‑136 (MQ=38)                                                                       tgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGa                                                               >  1:266895/1‑136 (MQ=38)                                                                              gttgccgttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGt                                                        >  1:364922/1‑136 (MQ=37)                                                                                  ctctcgctctcgctctcgctctcgctctcgctctcgcttcggcttttgatCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAg                                                    <  1:405336‑M2/86‑1 (MQ=255)                                                                                  ctctcgctctcgctctcgctctcgctctcgctctcgcttcggcttttgatCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAg                                                    >  2:405336‑M2/51‑136 (MQ=255)                                                                                    gttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCGCGTCAAgcg                                                  >  2:42427/1‑136 (MQ=37)                                                                                    gttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAgcg                                                  <  1:50603/136‑1 (MQ=37)                                                                                     ttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAgcgc                                                 <  2:369992/136‑1 (MQ=37)                                                                                      tgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCt                                                <  1:163300/136‑1 (MQ=37)                                                                                         cgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAg                                             <  2:11652/136‑1 (MQ=37)                                                                                               cgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGccccc                                       >  1:34131/1‑135 (MQ=37)                                                                                               cgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCa                                       >  1:347851/1‑136 (MQ=37)                                                                                                        cgctctcgctctcgcttcggcttttgatCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGACCGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCGGTCAAGCGCTGAGGCCCCTGTATGGGGc                              <  2:364689‑M2/108‑1 (MQ=255)                                                                                                        cgctctcgctctcgcttcggcttttgatCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGc                              <  2:27166‑M2/108‑1 (MQ=255)                                                                                                                            cttttgatCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCgg          >  1:68596‑M2/9‑136 (MQ=255)                                                                                                                            cttttgatCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCgg          >  1:370553‑M2/9‑136 (MQ=255)                                                                                                                                    cttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAgg  >  2:274929/1‑136 (MQ=32)                                                                                                                                    |                                                                                                                                        CGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGG  >  NC_002947/4912816‑4913082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.