New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3388557	4 (0.430)	4 (0.430)	3/264	0.6	57.1%	coding (501/546 nt)	PP_2985	hypothetical protein
	?	NC_002947	= 5354541	2 (0.210)					coding (2018/2937 nt)	PP_4704	hypothetical protein

TTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3388483‑3388557 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGTAGGGCGTCAGCGTGGTCAATTCGACGCGCTTGAAGCTGGTGGCAATGTCCAGGCTGGCCAGTGGGTTGAACGGGTTGAGTGCGCCCTTGATGGTAACCGGTGCGTAGCGGTCTAC  <  NC_002947/5354541‑5354423                                                                                                                                                                                                    TTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGAGTAGGGCGTCAGCGTGGTCAATTCGACGCGCTTGAAGCTGTTGGCAATGTCCAGGCTGG                                                            >  2:130033/1‑136 TTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGAGTAGGGCGTCAGCGTGGTCAATTCGACGCGCTTGAAGCTGGTGGCAATGTCCAGGCTGG                                                            >  1:126948/1‑136           CTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCCGAGTAGGGCGTCAGCGTGGTCAATTCGACGCGCTTGAAGCTGGTGGCAATGTCCAGGCTGGCCAGTGGGTT                                                  <  1:232826/136‑1                                                           TATCTCGGCATGACCCCGAGTAGGGCGTCAGCGTGGTCAATTCGACGCGCTTGAAGCTGGTGGCAATGTCCAGGCTGGCCAGTGGGTTGAACGGGTTGAGTGCGCCCTTGATGGTAACCGGTGCGTAGCGGTCTAC  <  1:24004/136‑1                                                                                                                                                                                                    TTCTAATCTACTCGTTTAAATACAATAGCTTAGAGAACGAATGTCCTAATTTTTGCCTTATCTCGGCATGACCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3388483‑3388557 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGTAGGGCGTCAGCGTGGTCAATTCGACGCGCTTGAAGCTGGTGGCAATGTCCAGGCTGGCCAGTGGGTTGAACGGGTTGAGTGCGCCCTTGATGGTAACCGGTGCGTAGCGGTCTAC  <  NC_002947/5354541‑5354423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.